Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1766 145 7e-30 seq2209 136 3e-27 seq2021 127 2e-24 >seq1766 Length=1490156 Score = 145 bits (160), Expect = 7e-30 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || ||| | || || | ||||| || | ||| Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || ||||||||| ||| ||||||||||| ||||||||||| Sbjct 1263330 GATACCATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCACCTGAT 1263386 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || |||||||| ||||| ||||||||| ||| ||| | ||||||| Sbjct 1263387 CAACAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTAC 1263446 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || || ||| | || ||| | || |||| || Sbjct 1263447 AATATTCAAAAAGAATCAACCCTCCATCTTGTTCTACGTCTTCGAGGTGG 1263496 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | || || || | || || | ||||| || | || Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || |||| || |||| ||| ||||||||||| ||||| ||||||| Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCTGACC 1264071 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || ||||| || |||||||||||||||| ||| ||| | |||||||| Sbjct 1264072 AACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACA 1264131 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 |||||||||||||||| || || ||| Sbjct 1264132 ATATTCAAAAAGAATCAACCCTCCAT 1264157 Score = 129 bits (142), Expect = 5e-25 Identities = 154/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| | || || | ||||| || | ||| Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || ||||||||| ||| ||||||||||| ||||| ||||| Sbjct 1264242 GATACCATTGAA--AATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCTCCTGAT 1264298 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || |||||||| ||||||| || || | ||||||| Sbjct 1264299 CAACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTAC 1264358 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||||||||||||||| || || || Sbjct 1264359 AATATTCAAAAAGAATCGACTCTTCA 1264384 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || ||| | || || | ||||| || | || Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||| |||| ||| || |||||||| ||||| ||||| Sbjct 1263101 AGATACCATTGAA--AATGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCTGA 1263157 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || |||||||| ||||| || ||||||| || ||| | |||||| Sbjct 1263158 TCAACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTA 1263217 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 |||||||||||||||||| || || ||| Sbjct 1263218 CAATATTCAAAAAGAATCTACACTTCAT 1263245 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| |||||| | || || | || || ||| | || Sbjct 1262814 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 1262873 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| ||||| ||||| |||||||| || Sbjct 1262874 GATACCATTGAA--AATGTAAAAGCGAAAATTCAA-GACAAGGAAGGAATTCCACCAGAT 1262930 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | || ||||| || |||||| ||||||||| || || | ||||| Sbjct 1262931 CAGCAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTAT 1262990 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||| || || |||||||||| || | ||||||| |||| Sbjct 1262991 AATATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTAAGAGGTGGAA 1263042 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| |||| ||| | || || || | ||| Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT 1263557 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | || |||||| || || || || ||||| || || || Sbjct 1263558 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1263617 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || ||||| | ||||||| ||| ||| | |||||| ||| Sbjct 1263618 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAAT 1263677 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || ||||||||||| Sbjct 1263678 ATTCAAAAAGAATCAACACTACATTTAGT 1263706 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || |||||| | || || ||| ||||||| | || || || | || Sbjct 1263725 AATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATC 1263784 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| ||||| || | || |||||| || || || || ||||| || || || Sbjct 1263785 TGATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCA 1263844 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG--CACTGTGGGCGATTAC 25175 || | | |||||||| || ||||| | ||||||| ||| |||| | || |||| Sbjct 1263845 GCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGG--ATTAT 1263902 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||||||| || || ||||||||||| Sbjct 1263903 AATATTCAAAAAGAGTCGACACTACATTTAGT 1263934 >seq2209 Length=4115427 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| | |||||| | ||||| || | || Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| ||||||||||| ||||| ||||||| Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAG-GACAAAGAAGGAATTCCTCCTGACC 648537 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| || ||||| ||||||||| | ||| | ||||| | Sbjct 648536 AGCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATA 648477 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||| || || |||||||| | || || |||||||| Sbjct 648476 ATATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || ||| ||||||| | ||||| || | || Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| | ||| | || | ||| || |||||||| ||||| || || | Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCCGATC 664186 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | || ||||| || |||||| | ||||||| | || | ||||||| Sbjct 664185 AGCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACA 664126 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||||| || || ||| | || | || || |||| |||| Sbjct 664125 ATATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGGAA 664075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || | || ||| | ||||| || | || Sbjct 663620 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 663561 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | ||| | || | ||| || |||||||| ||||| ||||| | Sbjct 663560 GGATACAATAGAAAACGTAAAGGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCTGATC 663502 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| || |||||| | ||||||| | || | ||||||| Sbjct 663501 AGCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACA 663442 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||| |||||||| || | || || || | || || |||||||| Sbjct 663441 ATATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGGA 663392 >seq2021 Length=1035722 Score = 127 bits (140), Expect = 2e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| |||||||| || |||||||| |||||| | ||||| | ||||| || | Sbjct 239395 ACGATGCAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCA 239336 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| || |||| || |||| ||| || |||||||| || |||||||| Sbjct 239335 TCAGATACTATAGAAAATGTGAAAGCTAAAATTCAG-GATAAAGAAGGAATACCACCTGA 239277 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||||||||| || || ||||||||||||| || ||| | || || Sbjct 239276 TCAGCAACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTA 239217 Query 25175 CAATATTCAAAAAG 25188 ||||||||||||| Sbjct 239216 TAATATTCAAAAAG 239203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315161439265