Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq613 165 9e-36 seq302 123 3e-23 seq1899 120 3e-22 seq1865 118 1e-21 seq1654 116 4e-21 >seq613 Length=358256 Score = 165 bits (182), Expect = 9e-36 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||| ||||||| |||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 260012 ATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGCAACTTGA 260071 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||| | || || || || || ||||||||| ||||| || || ||| Sbjct 260072 AAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTCAACAAGA 260131 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || ||||| || ||||||||||| || || | ||| |||||||||| Sbjct 260132 TTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATATAAAATGT 260191 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAA 93587 || ||| || | | |||| |||||| ||| ||| | | ||| Sbjct 260192 TTTTCACTGTCAGTTAAATTATTCCAATCAAATACATCCTATAAAA 260237 Score = 125 bits (138), Expect = 8e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| || || | ||||||||||||||| | ||||| | || |||| || || Sbjct 259697 TCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 259756 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || || | || ||||||||| ||| || |||||||| || || ||||| || Sbjct 259757 AACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 259816 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | |||||| | |||| | || | | | | ||||| ||||| ||||||| ||| Sbjct 259817 ACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAGCT 259876 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 ||||| || ||| || | |||||||||||||||||| | | |||| Sbjct 259877 TTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATAAGAAGTCTC 259925 >seq302 Length=472691 Score = 123 bits (136), Expect = 3e-23 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 438714 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 438655 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||||| || || Sbjct 438654 GTGGGTTCGAACCCCACACCTGGCAAATTTTTTTT 438620 Score = 123 bits (136), Expect = 3e-23 Identities = 85/95 (89%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 448607 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 448548 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||||| || || Sbjct 448547 GTGGGTTCGAACCCCACACCTGGCAAATTTTTTTT 448513 >seq1899 Length=1200260 Score = 120 bits (132), Expect = 3e-22 Identities = 83/93 (89%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 1189409 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 1189350 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||||||||||||||| |||| | ||| Sbjct 1189349 GTGGGTTCGAACCCCACACCTGGCAAAATTTTA 1189317 >seq1865 Length=1269415 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 920864 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATTGGGAGC 920805 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 920804 GTGGGTTCGAACCCCACACCTGGCAAA 920778 >seq1654 Length=5440108 Score = 116 bits (128), Expect = 4e-21 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCGTGGG 126327 |||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||||||| Sbjct 967165 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCTCTGGGAGCGTGGG 967224 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||||||| | ||||| || || |||||| Sbjct 967225 TTCGAACCCCACACTTAGCAAATATTTTTTTTTATTTTT 967263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843878392440