Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq1865 78.8 2e-11 >seq1865 Length=1269415 Score = 78.8 bits (86), Expect = 2e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 ||||| || || ||||| ||| | || || | || | || | ||| || |||||| | Sbjct 337304 TGTACATTCCATAAATATGGTGCGTCCGGTACAGTGCAGAAATTCGATGGTCTCTGCGTA 337245 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || ||| |||| | ||||| |||||||| ||| | || ||||||||||||||| | | Sbjct 337244 CTACCGTTGAACATCGTCAATGAGAAGATTTACGTGTTTCTCTGGTTCTGGTTCATCATC 337185 Query 3487 CTAGCCATCATCAGCGGT 3504 ||| || | | |||||| Sbjct 337184 CTATCCGTATTAAGCGGT 337167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479668168500