Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1766 149 5e-31 seq2209 138 1e-27 >seq1766 Length=1490156 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| |||||| | ||| | || |||||||||||||| ||||||||| Sbjct 1264183 ATACCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCG 1264124 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | |||||| ||||| |||| | | ||||||||| ||| Sbjct 1264123 GAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGA 1264064 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| || ||| | | ||||| || |||| | ||| Sbjct 1264063 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCA 1264004 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || |||||||| || ||||| ||||| Sbjct 1264003 ACTTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| ||||| | ||| | ||||||||||||||||| ||||||||| Sbjct 1263271 ATACCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCG 1263212 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||| || |||| | | |||||| || ||| Sbjct 1263211 GAAAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGA 1263152 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||| | |||| | | ||||| ||| || | | ||| Sbjct 1263151 GGAATACCTTCTTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTC 1263093 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || ||||| |||||||| ||||| Sbjct 1263092 AACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| | ||| | || |||||||||||||| ||||||||| Sbjct 1263499 ATACCACCTCGAAGACGTAGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCG 1263440 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| || |||||||| || |||| || | |||||| || || Sbjct 1263439 GAAAGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGT 1263380 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| ||| ||||| | ||||| ||| || | | ||| Sbjct 1263379 GGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCA 1263320 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || |||||||| || ||||| ||||| Sbjct 1263319 ACTTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||||||||| ||||||||| | ||||| |||||| | |||||| ||| Sbjct 1264378 GTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCA 1264319 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | |||||| || |||||||| ||||||||||| ||| ||| |||| Sbjct 1264318 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTT 1264259 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | | ||| || || | || | ||||| ||||| |||||| Sbjct 1264258 ACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTT 1264199 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 1264198 TTAACGAAAATTTGCAT 1264182 Score = 122 bits (134), Expect = 7e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 |||||||||| || || ||||||||||| || ||||| | | || ||||| |||||| Sbjct 1263022 ACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTACGTCCATCTTC 1262964 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||||||||| |||| | | || || || || ||||| ||||| ||||| Sbjct 1262963 TAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 1262904 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||||| | ||||| ||| || | || || || |||| || | ||||| Sbjct 1262903 AATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTT 1262844 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||||| ||||| ||||||||| Sbjct 1262843 ACCTGTCAATGTTTTGACAAAGATCTGCATG 1262813 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||||| || |||||||||||||| || |||||| | ||||||| ||| Sbjct 1263710 CAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATC 1263651 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || ||||||||||| | || | | || || || |||||||| || || || || Sbjct 1263650 TTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATC 1263591 Query 114290 GGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 || ||| |||||| | | ||||| || || | | ||| || |||| || | | Sbjct 1263590 TTGGAT-TTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAATGG 1263532 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || ||||| || || ||||| ||||| Sbjct 1263531 TTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||||| || || ||||||||||| || ||||| | |||||| ||| Sbjct 1263938 CAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATC 1263879 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| || ||||||||||| | || | | || || || || ||||| || || || || Sbjct 1263878 TTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTATC 1263819 Query 114290 GGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 || ||| |||||| | | ||||| || || | | ||| || |||| || | | Sbjct 1263818 TTGGAT-TTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAGTGATGG 1263760 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || ||||| || || ||||| ||||| Sbjct 1263759 TTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 >seq2209 Length=4115427 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 114147 TTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 ||| | || || || || |||||||| ||||| || | ||||||||||| ||||| || Sbjct 648191 TTATACATTCCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTA 648250 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 ||||| | ||| | |||||| |||||||||||||| |||| | ||| ||||| Sbjct 648251 TAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGA 648310 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || |||||||| |||||||| || |||||| ||| | | ||| | ||||| | Sbjct 648311 TCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAA 648370 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| || || | ||| | || ||||| || |||||||| ||||| || ||||| Sbjct 648371 GCTTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||||||| |||||||| | |||||||| |||||||| || ||||| Sbjct 648425 ATACCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCT 648484 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | |||||| || ||||||||||| | || | ||| || ||||| ||| Sbjct 648485 GAGAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGA 648544 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| |||| | ||| | ||||| | | ||| Sbjct 648545 GGAATTCCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCA 648604 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 648605 ACTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| |||| ||| | ||||| ||||| ||||| || ||||| Sbjct 663618 ATTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCT 663677 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||||||||||||||| ||||| |||| | || || || || ||| Sbjct 663678 GAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGA 663737 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| ||| | | || | || || | | ||| Sbjct 663738 GGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCA 663797 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || |||||||| |||||||| ||||| Sbjct 663798 ACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| |||| ||| | ||||| ||||| ||||| || ||||| Sbjct 648653 ATTCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCT 648712 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||||||||||||||| ||||| | || | ||| ||||| || || Sbjct 648713 GAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGT 648772 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || ||||| || |||||| ||||| | || | ||||| | | ||| Sbjct 648773 GGAATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCA 648832 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || | ||| || ||||| |||||||| Sbjct 648833 ACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 648882 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||||||| || | ||| | ||||||||||||||||| |||||||| Sbjct 664074 ATTCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCT 664133 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||||||||||||| ||||| |||| | || || || || ||| Sbjct 664134 GAGAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGA 664193 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| |||| | || | || || | | ||| Sbjct 664194 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCA 664253 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 664254 ACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||||||| |||||||| | |||||||| ||||| || || ||||| Sbjct 663846 ATACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCT 663905 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | ||||||||||||||| ||||| | || | || ||||| || || Sbjct 663906 GAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGT 663965 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| |||| | || | || || | | ||| Sbjct 663966 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCA 664025 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 664026 ACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664075 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || |||||||| || || || | ||||||||||| ||||| |||||||| Sbjct 663393 CCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAG 663452 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | ||||||||||||||| ||||| | || | || || || || |||||| Sbjct 663453 AGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 663512 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || |||||||| || |||||| |||| | ||| | || || | | ||| || Sbjct 663513 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAACT 663572 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || |||||||| |||||||| ||||| Sbjct 663573 TCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 663619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420121952336772