Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2021 168 2e-36 seq1766 152 1e-31 seq2209 143 6e-29 seq2420 87.8 4e-12 >seq2021 Length=1035722 Score = 168 bits (186), Expect = 2e-36 Identities = 156/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 ||||||| ||||||||||| | | || ||||| ||||||||||| ||||| || || | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | ||||| || ||| | ||| ||||||||||||||||| ||||| |||||||| |||| Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 |||||| ||| | ||||||||| || ||||| || || || |||| ||| || || | Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 288464 ATATCTGCATTATGTTAT 288481 |||||||||| || ||| Sbjct 239383 ATATCTGCATCGTGGTAT 239400 >seq1766 Length=1490156 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | |||||| || |||| || ||||||||| ||||| || |||| Sbjct 1264408 CCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAA 1264349 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| ||||||||||| || ||||||| | ||||||| | || Sbjct 1264348 AGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGA 1264289 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || ||||| ||||| || ||||| || | ||| | ||| ||| Sbjct 1264288 ATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACT 1264229 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| ||||| || ||||| || ||||| Sbjct 1264228 TCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||| | || ||||||||| ||||| || |||| Sbjct 1264180 CCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 1264121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||||||||||||||| || ||||||| | |||||| | || Sbjct 1264120 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 1264061 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || ||||| |||||||| ||||| |||| |||| | ||| ||| Sbjct 1264060 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACT 1264001 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || ||||| || || ||||| |||||||| || |||||| Sbjct 1264000 TCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| | || ||||||| || ||||||||| ||||| || |||| Sbjct 1263268 CCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 1263209 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || ||||| || || ||||||| | ||||||| | || Sbjct 1263208 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 1263149 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||| ||||| ||||| || ||||| || | ||| | ||| ||| Sbjct 1263148 ATACCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACT 1263089 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || || || || || || || ||||| || || |||||| Sbjct 1263088 TCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| |||||||| || | | || ||||| ||||||| |||||| || || ||| Sbjct 1263004 TCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 1262945 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | || ||| ||| |||||||| || || || ||||||||||| || ||| Sbjct 1262944 ATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTT 1262885 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || || || || || || |||| || ||||| Sbjct 1262884 TCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACA 1262825 Query 288463 AATATCTGCATTAT 288476 || |||||||| || Sbjct 1262824 AAGATCTGCATGAT 1262811 >seq2209 Length=4115427 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || ||||| | ||| ||||||| || ||||||||| ||||| || || | Sbjct 664076 TCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGA 664135 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | ||| ||||| | ||||||||| || ||||||| || || ||| || Sbjct 664136 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGG 664195 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || || || || || ||||||| ||| | ||| || Sbjct 664196 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAAC 664255 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || || || || ||||| ||||| || || |||||| Sbjct 664256 TTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 129 bits (142), Expect = 1e-24 Identities = 178/245 (73%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 |||||| |||||| ||| || || ||||| | || | |||| || |||||| || Sbjct 648187 ATGATT-ATACAT-TCCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGA 648244 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 |||||||| || | || || | ||| ||||||| |||||| || || ||||| | ||| Sbjct 648245 ATATTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGT 648304 Query 288352 TGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 |||||| ||||| |||||||||||||| || || || ||||| || |||||||| Sbjct 648305 TGTTGA---TCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCTATT 648361 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | ||| ||||| | || || ||||| || || ||||| ||||| || || Sbjct 648362 GTGTCTGAAGCTTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATT 648421 Query 288469 TGCAT 288473 ||||| Sbjct 648422 TGCAT 648426 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | ||| ||||||| || ||||| || |||||||| || | Sbjct 663620 TCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGA 663679 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | || ||||| | |||||| || || ||||||| || || ||| | || Sbjct 663680 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGG 663739 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || ||||| || || ||||| | ||| | ||| || Sbjct 663740 AATTCCTTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAAC 663799 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || || ||||| || || ||||| ||||| || || ||||| Sbjct 663800 TTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||||||||| || | ||| || | || ||||| | |||||| || || || Sbjct 663884 TTCCTTTTGGATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAA 663943 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| || |||||| ||| |||||||||||||| || || || || || || || Sbjct 663944 AATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATT 664003 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||||| ||| | ||| ||||| || ||||| || || || || ||||| ||||| Sbjct 664004 CTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGAC 664063 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 664064 AAAGATTTGCATT 664076 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | || ||| ||||| |||||||| || | ||| || | | Sbjct 648437 AGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCTT 648496 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||||| ||||| || || || |||| ||| || || | || ||||||||| Sbjct 648497 CCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTCT 648556 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 || ||||| || || || || || |||||||| | || | ||| ||||| || ||| Sbjct 648557 TTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTG 648616 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || ||||| ||||| || || |||||| Sbjct 648617 ATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | ||| | || | || |||||| || ||||| || || Sbjct 663392 TCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAA 663451 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | ||| ||||| | ||||||||| || || |||| || || ||| | || Sbjct 663452 GAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGG 663511 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||||||||| || || || || || ||||||||||| | ||| | ||| || Sbjct 663512 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAAC 663571 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || ||||| || || ||||| ||||| || || |||||| Sbjct 663572 TTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 663620 >seq2420 Length=677074 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| || ||||| ||||| || ||||| || | ||| | ||| ||||| Sbjct 459046 CCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATGGTATCTGATGCTTCAACTTCA 458987 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| || || |||||||| || ||||||||||| ||| Sbjct 458986 AGAGTAATAGTCTTGCCAGTTAGAGTCTTCACAAATATCTGCATGATG 458939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179617657083218