Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1766 100 3e-16 seq624 100 3e-16 seq180 98.7 1e-15 seq2 98.7 1e-15 seq2087 96.9 4e-15 seq1 91.5 2e-13 seq2209 87.8 2e-12 seq1195 87.8 2e-12 seq2332 86.0 7e-12 seq2210 86.0 7e-12 seq1446 84.2 2e-11 >seq1766 Length=1490156 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| |||||||| || ||||| | ||| ||| ||||||||||| ||||| | Sbjct 1263952 CCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAA 1263893 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| |||||||| || || | || ||||| || | || Sbjct 1263892 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGA 1263833 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||| || |||||| ||| | | | | || || | ||| || Sbjct 1263832 ATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACC 1263773 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| ||||| || ||||| || || ||||||||| Sbjct 1263772 TCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCATT 1263725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| |||||||| || ||||| | ||| || ||||||||||| ||||| | Sbjct 1263724 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAA 1263665 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| |||||||| || || | || ||||| || | || Sbjct 1263664 AGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGA 1263605 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||| || |||||| ||| | | | | || || | ||| || Sbjct 1263604 ATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACC 1263545 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || |||||||| ||||| || ||||| || || |||||||| Sbjct 1263544 TCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||||| || ||||| ||||| ||| ||||||||||| ||||||| Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || ||||| || |||||||| || || | || ||||| || | ||| Sbjct 1262980 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 1262921 Query 42102 ACGCTCTCCTTGTCCATGATTTTT 42125 | | ||||||| | ||| |||| Sbjct 1262920 ATTCCTTCCTTGT-CTTGAATTTT 1262898 >seq624 Length=355024 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 56997 GAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 38751 GAAAAATAATCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 38810 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 38811 TACTAACCACTATACTACCGAGGA 38834 >seq180 Length=559476 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 341197 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 341256 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 341257 TACTACCGAGGATT 341270 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 355022 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 355081 Query 57058 TCACCACTATACTACCGAGGATT 57080 | |||||||||||| |||||||| Sbjct 355082 TAACCACTATACTAACGAGGATT 355104 >seq2 Length=3515984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 56998 AAAAATTT----TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 1957247 AAAAATTTAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1957306 Query 57054 ATACTCACCACTATACTACCGAGGATT 57080 ||||| |||||||||||| |||||||| Sbjct 1957307 ATACTAACCACTATACTAACGAGGATT 1957333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1958140 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1958199 Query 57067 TACTACCGAGGATTGAATAT 57086 |||||||||||| | |||| Sbjct 1958200 TACTACCGAGGAATCTATAT 1958219 >seq2087 Length=947496 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 797691 AAATATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 797632 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 797631 TGACCACTATACTACCGAGGA 797611 >seq1 Length=6352280 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 826537 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 826478 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 826477 ATACTAACGAGGATT 826463 >seq2209 Length=4115427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | ||| || ||||| | ||| |||||||||||||| ||||| | Sbjct 648427 ACCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGA 648486 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | || |||||||| |||||||| || || | || |||||||| | || Sbjct 648487 GAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGG 648546 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| | || | || | | | | ||||| | ||| | Sbjct 648547 AATTCCTTCTTTGTCC-TGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAA 648605 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | ||||| ||||| || || || || || ||||| ||||||||| Sbjct 648606 CTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 >seq1195 Length=2644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 81 AATAATGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 22 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 21 TAACCACTATACTATCGAGGA 1 >seq2332 Length=772421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 337536 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 337595 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 337596 TACTATCGAGGA 337607 >seq2210 Length=838879 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 765830 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 765771 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 765770 TACTATCGAGGA 765759 >seq1446 Length=1996334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 1861912 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGA 1861854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196293121040