Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2209 143 3e-29 seq1766 131 2e-25 seq2021 89.7 5e-13 >seq2209 Length=4115427 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | |||||||||| || || ||||| ||||| || ||||||| | Sbjct 663621 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 663680 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||| || ||||| ||| | || | || ||||| || |||||| Sbjct 663681 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGA 663740 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| | | || ||||| ||| ||| | |||||| || || || Sbjct 663741 ATTCCTTCTTTATCTTG-AATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAAC 663799 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||||||| || | |||||| || ||||||||||| Sbjct 663800 TTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | || ||||||| || |||||||||||||| |||||||||| | Sbjct 664077 CCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAG 664136 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | |||||||| || || || ||| | || | || ||||| ||||||||| Sbjct 664137 AGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGA 664196 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| || || ||||||| ||| | ||||| || || ||| Sbjct 664197 ATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACT 664256 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||| || || || | |||||| || || ||||||||| Sbjct 664257 TCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||| ||| | || ||||| ||||| || || ||||||| || || | | Sbjct 663860 TCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGTGTTCTACC 663919 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||||| || ||||| ||| |||| | || || || || || |||||||||||||| Sbjct 663920 ATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTT 663979 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||||||| ||| | ||||| || || ||||| | ||| | Sbjct 663980 ATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGAT 664039 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || || | |||||| || || ||||||||| Sbjct 664040 GGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || ||||| |||||||| || ||||||| || || | | ||||| Sbjct 648446 ACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCTTCCATCTTCT 648505 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| || || ||| |||| | || |||||||| ||||||||||||||||| || || Sbjct 648506 AGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTGTCCTGA 648565 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||||||| || | ||| || || || ||||| | || | || || Sbjct 648566 ATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGATAGTTTTC 648625 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | |||||| || |||||||||||| Sbjct 648626 CCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||| ||||||||| || || | | |||||||| || || || Sbjct 663423 GTAGATTCTTTCTGAATATTGTAATCTAAGAGTGTCCTTCCATCTTCAAGTTGTTTTCCA 663482 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||| || ||||||||||||||||| ||||| || || |||| Sbjct 663483 GCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCCTTT 663542 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| || || ||||| | || | ||||| || || | |||| Sbjct 663543 ACGTTTTCTATTGTATCCGAAGCTTCAACTTCAAGTGTAATAGTCTTTCCAGTAAGAGTT 663602 Query 64427 TTTACGAAAATTTGCATT 64444 || || |||||||||||| Sbjct 663603 TTGACAAAAATTTGCATT 663620 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||| |||| || |||||||| ||||| || ||||||| Sbjct 648200 CCCCCTCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAA 648259 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || || || ||| | || | || || || || |||||| Sbjct 648260 AGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 648319 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| ||||| | | || ||||| ||| || | ||| || || || || Sbjct 648320 ATTCCTTCTTTATCTTG-AATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAAC 648378 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||||||| || | |||||| || || |||||||| Sbjct 648379 TTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 >seq1766 Length=1490156 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| |||||||| | | || || | ||| Sbjct 1263481 AGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCT 1263422 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || |||||| | || || | ||| || || || ||||| |||||||| ||| Sbjct 1263421 TCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCT 1263362 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| |||||| || | |||||| || || ||||| | ||| | || Sbjct 1263361 TGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTT 1263302 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||| |||||||||||||| Sbjct 1263301 TTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || |||| ||||||||||||||||| |||||||| | | || || | || Sbjct 1264394 AAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATC 1264335 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || ||| | || | | ||| || || |||||||| |||||||| || Sbjct 1264334 TTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTC 1264275 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | |||||| || || ||||| | ||| | || Sbjct 1264274 TTGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGT 1264215 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | |||||| |||||||||||||| Sbjct 1264214 TTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || |||||||||||||| |||||||| | | || || | ||||| Sbjct 1264162 ACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCT 1264103 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | | ||| ||||| |||||||| |||||||| ||||| Sbjct 1264102 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGA 1264043 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||||| ||| || | ||||| || || ||||||| ||| | ||||| Sbjct 1264042 ATTTTA-GCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATAGTCTT 1263984 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | |||||| ||||||||||||||| Sbjct 1263983 TCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||||| || |||||||||||||| |||||||| | | || || | ||||| Sbjct 1263250 ACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCC 1263191 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||| || |||||| | || | | ||| || || |||||||| |||||||| || || Sbjct 1263190 AACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGA 1263131 Query 64355 ATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| |||||| | | || || |||| || || ||||||| ||| | || || Sbjct 1263130 ATTTTA-GCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTT 1263072 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | ||||| || |||||||||||| Sbjct 1263071 TCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | ||||| ||||||||||| || ||||| | | || || | ||||| Sbjct 1263934 ACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCC 1263875 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| || || ||| |||| | | ||||| || || ||||| || || || ||||| Sbjct 1263874 AGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTATCTTGG 1263815 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| || ||| || | |||||| || || || || | ||| | ||| || Sbjct 1263814 ATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAGTGATGGTTTTT 1263755 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || | ||| || ||||||||||||||| Sbjct 1263754 CCCGTAAGAGTCTTAACGAAAATTTGCATT 1263725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||||||||| || ||||| | | || || | ||||| Sbjct 1263706 ACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCC 1263647 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||| || || ||| |||| | | ||||| || |||||||| || || || ||||| Sbjct 1263646 AGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATCTTGG 1263587 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| || ||| || | |||||| || || || || | || | ||| || Sbjct 1263586 ATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAATGGTTTTT 1263527 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| || |||||||||||||| Sbjct 1263526 CCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || || ||||||||||| || ||||| | | || || | ||| Sbjct 1263025 AGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCT 1262966 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || ||| | || | | ||||| || || ||||||||||| || ||| Sbjct 1262965 TCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCT 1262906 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | ||||| ||| || || || | ||||| || Sbjct 1262905 TGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTT 1262846 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| ||||| || || || ||||| Sbjct 1262845 TTACCTGTCAATGTTTTGACAAAGATCTGCAT 1262814 >seq2021 Length=1035722 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||||||||| || || || | | || || | ||||| | ||||| || ||| ||| Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACC 64372 | || || ||||| || || || ||||||||||| || || | |||| ||||| ||| Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTG-AATTTTAGCTTTCACATTT 239321 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| || || ||||| | ||| | || || || ||||||||||| || Sbjct 239322 TCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACA 239381 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 239382 AATATCTGCAT 239392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629617043640