Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1766 120 3e-22 seq2209 109 5e-19 >seq1766 Length=1490156 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||| |||| || ||||||| || ||||||||||||||||| ||||| Sbjct 1263041 TCCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGA 1262982 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| ||||| ||||| ||||| ||||||||| |||||||| || || Sbjct 1262981 TAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 1262922 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||| || | | ||| | ||| || | ||| || Sbjct 1262921 AATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAAC 1262862 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||| || |||| ||||| ||||| ||||||||| Sbjct 1262861 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 1262813 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || ||||| || ||||||| || || |||||||||||||| |||||| Sbjct 1263725 TCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGA 1263666 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || |||||||| ||||| | ||||||| |||||||| ||||| Sbjct 1263665 AAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGG 1263606 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 || |||||||| || |||||| || | | ||| | || || | | || || | Sbjct 1263605 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCT-TCAA 1263547 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 1263546 CCTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| || || | ||| | ||||| ||||||||||||||||||||| Sbjct 1263268 CCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAA 1263209 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||| || || ||||||||| ||| ||||| ||||| Sbjct 1263208 AGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGA 1263149 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| ||| ||| || || | | ||| | ||| || | | || || Sbjct 1263148 ATACCTTCTTTATCC-TGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAAC 1263090 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || || ||||| |||||||| ||||| Sbjct 1263089 TTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| || | ||| | || || ||||||||||||||||||||| Sbjct 1264180 CCACCACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAA 1264121 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||||||||| ||||||||| ||| || || ||||| Sbjct 1264120 AGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 1264061 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| ||| || || | | ||| | || || | | || || Sbjct 1264060 ATACCTTCTTTGT-CTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAAC 1264002 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || |||||||| || ||||| ||||| Sbjct 1264001 TTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||||||||||||| | || || ||| || | ||||||||| Sbjct 1264378 GTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCA 1264319 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || ||||||||| ||| ||||| ||||| || || || |||| | ||| ||| ||| || Sbjct 1264318 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGT-CTTGAATTTTTGCTTT 1264260 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||| || | | || ||||| | || | ||||| ||||| ||||| Sbjct 1264259 TACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGT 1264200 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || ||||| ||||| Sbjct 1264199 TTTAACGAAAATTTGCAT 1264182 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | || ||||| || ||||||| || ||||||||||||||||| ||||| Sbjct 1263953 TCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGA 1263894 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || |||||||| ||||| | ||||||| |||||||| || || Sbjct 1263893 AAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGG 1263834 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGA 127064 || |||||||| || |||||| || | | ||| | || || | | || || | Sbjct 1263833 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCT-TCAA 1263775 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | ||||| || || ||||| || || ||||| ||||| Sbjct 1263774 CCTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||||||||||||| | || ||| ||| ||||||||||| || Sbjct 1263466 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTGTTTACCG 1263407 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || |||||| || ||| ||||| || || || || || |||| | ||| ||| ||| || Sbjct 1263406 GCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGT-CTTGAATTTTTGCTTT 1263348 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||| || | | || ||||| | || | ||||| || || ||||| Sbjct 1263347 TACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAGT 1263288 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || ||||| ||||| Sbjct 1263287 TTTGACGAAAATTTGCAT 1263270 >seq2209 Length=4115427 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || ||| |||| ||| | ||||| |||||||||||||||||||| Sbjct 664076 TCCACCTCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGA 664135 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || || ||||||||||| |||||||||| |||||||||||||| Sbjct 664136 GAGTGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGG 664195 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || || || ||| | | || | || || | | || || Sbjct 664196 AATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAAC 664255 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || |||||||| ||||| || ||||| Sbjct 664256 TTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| || ||||| | ||||| || ||||||||||| ||||| | || | Sbjct 648439 TCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCTTCC 648498 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| ||||||||||| ||||| | ||||| || ||||| || ||||| || || || || Sbjct 648499 ATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTCTTT 648558 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| || || ||| | | ||| | ||||| | | || ||||| | || | Sbjct 648559 GTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGAT 648618 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || |||||||| |||||||| ||||| Sbjct 648619 AGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| || || | || ||| ||||| || | ||||| ||||| |||||||||||||| Sbjct 663391 CTCCTCCTCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTA 663450 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || | ||| || || ||||||||||| | |||||||| |||||||| |||| Sbjct 663451 AGAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAG 663510 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | || || || || || || || ||| | | ||| | || |||| | || | Sbjct 663511 GAATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAA 663570 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || || |||||||| |||||||| ||||| Sbjct 663571 CTTCAAGTGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 663619 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || ||| || | ||| | ||||||||||| |||||||| ||||| Sbjct 663620 TCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGA 663679 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | | ||| || || ||||| ||||| |||||||||| |||||||| ||||| Sbjct 663680 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGG 663739 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| | | || || | | || | || || | | || | Sbjct 663740 AATTCCTTCTTTAT-CTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAA 663798 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | ||| | || ||||| || |||||||| |||||||| ||||| Sbjct 663799 CTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTGCAT 663847 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || ||| || | ||| | ||||||||||| |||||||| ||||| Sbjct 648655 TCCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGA 648714 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | | ||| || || ||||| ||||| | ||||| || || ||||| || || Sbjct 648715 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGG 648774 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || ||||| || | | ||| | | || || | | || | ||||| | | || | Sbjct 648775 AATTCCCTCTTTAT-CTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAA 648833 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | ||| | ||||| || || | ||| || ||||| |||||||| Sbjct 648834 CTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 648882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486350719440