Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2209 134 3e-26 seq2021 113 1e-19 seq1766 109 1e-18 >seq2209 Length=4115427 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | ||||| || || |||||||| | || || || | | ||| Sbjct 648433 TCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGT 648492 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| ||||| || || || || || | ||| |||||||| ||| |||||| Sbjct 648493 TCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCC 648552 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||||||||| ||| || ||| | ||||||| | ||| || || | Sbjct 648553 TTCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 648612 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| ||||||||||| Sbjct 648613 TGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTG 648651 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| || || ||||| | ||||| || | | || Sbjct 664082 TCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGT 664141 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || ||||| || ||||| | || ||||| || ||| |||||| Sbjct 664142 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCC 664201 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | || |||| | ||| || || | Sbjct 664202 TTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAG 664261 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| ||||| ||||| Sbjct 664262 AGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTG 664300 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||| || || || || || || | || || || | | ||| Sbjct 648205 TCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGT 648264 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||| || || || || || ||||| | ||| || || || ||| |||||| Sbjct 648265 TCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCC 648324 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || ||| | ||||||| | ||| || || || Sbjct 648325 TTCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAA 648384 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||| ||||| Sbjct 648385 GGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTG 648423 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || || || ||||| ||||| || || | || || || | | || Sbjct 663626 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 663685 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || || || || || ||||| | || ||||| || ||| |||||| Sbjct 663686 TCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCC 663745 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| || || || | || |||| | ||| || || || Sbjct 663746 TTCTTTATCTTGAATCTTAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAA 663805 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||||||||| Sbjct 663806 GGTAATGGTCTTGCCAGTGAGAGTTTTGACAAAAATTTG 663844 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||| || | ||| | || || || || || | ||||| || | || Sbjct 663398 TCGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAGAGTGT 663457 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 |||||||||||| || || ||||| || || || | || ||||| || ||| |||||| Sbjct 663458 CCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCC 663517 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| ||| ||| | || || | | ||| || || | Sbjct 663518 TTCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAACTTCAAG 663577 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || |||||||| ||||||||||| Sbjct 663578 TGTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTG 663616 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || | ||||| || || |||||||||| || || || | | || Sbjct 663854 TCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAGAGTGT 663913 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| || || || || || || || | || || || || || |||||| Sbjct 663914 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCC 663973 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| ||| || || | || |||| | ||| || || | Sbjct 663974 TTCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAG 664033 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||||||||| ||||| ||||| Sbjct 664034 AGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTG 664072 >seq2021 Length=1035722 Score = 113 bits (124), Expect = 1e-19 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | || ||||| | ||||| | ||||||||| | |||||||| || || || Sbjct 239205 TTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATA 239264 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT-CACGGATTC 199560 ||||| ||||| || || ||||||||| |||||||| ||| |||| ||| ||| Sbjct 239265 AGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTTTC 239323 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | || |||| || |||||| || | ||||| || |||||||| | |||||||||||| Sbjct 239324 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 239383 Query 199621 AATTTG 199626 || || Sbjct 239384 TATCTG 239389 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| | ||||| || || || || || ||||| | ||||| || | | ||| Sbjct 1263262 CGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTA 1263203 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||| || ||||| ||||| | | ||| || || ||| ||| ||| Sbjct 1263202 CGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCT 1263143 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| |||| | | ||| | ||| |||| | ||| || || || Sbjct 1263142 TCTTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAA 1263084 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| ||||||||||| Sbjct 1263083 AGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTG 1263045 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||| || ||||| | ||||| || | | || | ||||||| Sbjct 1264393 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCT 1264334 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || ||||| | | ||| || || ||| ||| |||||| || Sbjct 1264333 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 1264274 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||| || || ||| | ||| || | | ||| || || | || || || Sbjct 1264273 TGAAT-TTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGT 1264215 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || |||||||| || |||||||| Sbjct 1264214 TTTTCCGGTAAGAGTTTTAACGAAAATTTG 1264185 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| ||||| || |||||||||||||| | ||| | |||||||||| | || ||| Sbjct 1263171 ATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAATATTCAAAAA 1263230 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| ||||| |||||||| ||||||| Sbjct 1263231 GAATCTACACTTCATCTTGTTTTACGACTTCG 1263262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178884879907877