Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1766 109 4e-19 seq2021 100 2e-16 seq2209 86.0 4e-12 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||||||||| ||||| || || |||||||| ||||||||||| | Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | |||||| || |||| || || | |||||||| | || Sbjct 1262980 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 1262921 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| ||| | | | | || |||| | || || Sbjct 1262920 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 1262861 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||| ||||||||||| || || ||||| || |||||||||||| Sbjct 1262860 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATG 1262813 Score = 100 bits (110), Expect = 2e-16 Identities = 167/238 (70%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 ||| |||| || ||||| | ||| ||||| | || | ||| ||||||||| ||||| Sbjct 1264417 AATTATCGACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTG 1264358 Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601 ||||||| ||| | ||| |||| ||||||||||| || |||| || || | ||| | Sbjct 1264357 TAATCGG--AAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTT 1264300 Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 |||| | || | ||||||||||| |||||| ||| | | | | || || | Sbjct 1264299 GATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTATCAG 1264240 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||| ||||| || || | |||||| ||||| || ||||| Sbjct 1264239 AAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| ||| ||||| | || ||||||||| ||||||||||||| Sbjct 1263724 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAA 1263665 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| ||||| || ||||||| || | |||||||| | || Sbjct 1263664 AGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGA 1263605 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || || || ||||| ||||| | | | || || | ||| || Sbjct 1263604 ATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACC 1263545 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| ||||| ||||| | ||| || ||||| || ||||| Sbjct 1263544 TCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||||| ||| ||||| | || |||||||| ||||||||||| | Sbjct 1263952 CCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATC--CG 1263895 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| |||| ||||| || ||||||| || | |||||||| | || Sbjct 1263894 AAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGG 1263835 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | || || || || ||||| ||||| | | | || || | ||| | Sbjct 1263834 GAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAA 1263775 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || ||||| ||||| | ||| || ||||| || ||||| Sbjct 1263774 CCTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 >seq2021 Length=1035722 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| |||||||| || | ||| ||| |||| || ||||| || || |||||| Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| |||||||| | |||| |||||||| || ||||| ||| | | Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 ||| || |||| ||| || || | ||| || ||||||||||| |||||||| || | Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 239383 ATATCTGCAT 239392 >seq2209 Length=4115427 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||||||||| | | | | | |||| || | |||||| || |||| Sbjct 648235 TTCTTTCTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTACCAGCAAA 648294 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 |||||||| || ||||| | || | |||||||| || || || ||||| | Sbjct 648295 GATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCTTTAACATT 648354 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 ||| |||||||| ||| || || || ||||| || || || || | |||||| || Sbjct 648355 TTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTAATGGTCTTGCCAGTGAGAGTTTTGAC 648414 Query 39708 GAAGATCTGCAT 39719 ||||| ||||| Sbjct 648415 AAAGATTTGCAT 648426 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | | || ||| | ||| | ||| ||||| || ||||||||||| | Sbjct 648656 CCTCCTCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAG 648715 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | |||| ||| || | |||||| || ||||||| ||||| || ||||| | Sbjct 648716 A----GTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGG 648771 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | || ||||| || || || ||| | || ||| |||||||| ||| Sbjct 648772 TGGAATTCCCTCTTTATCTTGAATCTTAGCTTTTACATTCTCTATTGTGTCTGAAGCTTC 648831 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || |||||||| || || ||||||||||| Sbjct 648832 AACTTCTAAGGTGATGGTTTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 648882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359308198623