Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1632 100 3e-16 >seq1632 Length=1761243 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 153894 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGT 153953 ||||| | ||||| || || || |||| |||||||| || ||||||||||| || || Sbjct 107436 GCATATCGCTTAGCTCTTCAAACACGAGAACAGCATATTAGAAGAGACAAAGCTACTAGC 107377 Query 153954 AACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCAT 154013 || || || || || || ||||| ||||| |||||||||| | | ||||| | ||||||| Sbjct 107376 AATATTTGTACCGCACAAGCACTACTGGCAAATATGTCTGCAATGTATGCTGTATATCAT 107317 Query 154014 GGTGCAGATGGACTA 154028 || | || ||| || Sbjct 107316 GGACCTGAAGGAATA 107302 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 || || || |||||| | || || || || || ||| | |||| | |||| ||||| ||| Sbjct 108100 TATACACCATATCAACCAGAAATTTCACAAGGCAGACTTGAAGGTCTATTGAATTATCAA 108041 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || | || || | || ||| | |||||| ||||||||||| |||||||||| Sbjct 108040 ACAATGATATGTGATTTAACTGGAATGGAAATAGCGAACGCATCTCTCTTAGATGAAGGC 107981 Query 153408 ACTGCAGCAGCAGAAGC 153424 ||||||||||||||||| Sbjct 107980 ACTGCAGCAGCAGAAGC 107964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579195199171040