Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1632 109 6e-19 >seq1632 Length=1761243 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 158569 GCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGT 158628 ||||| | ||||| || || || |||| |||||||| |||||||||||||| || || Sbjct 107436 GCATATCGCTTAGCTCTTCAAACACGAGAACAGCATATTAGAAGAGACAAAGCTACTAGC 107377 Query 158629 AACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCAT 158688 || || || || ||||||||||| ||||| |||||||||| | ||||| | ||||||| Sbjct 107376 AATATTTGTACCGCACAAGCACTACTGGCAAATATGTCTGCAATGTATGCTGTATATCAT 107317 Query 158689 GGTGCAGATGGACTA 158703 || | || ||| || Sbjct 107316 GGACCTGAAGGAATA 107302 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 159541 TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAG 159600 || ||| | ||||| ||||||||||| ||| |||| || |||||| | ||| | Sbjct 106281 TCTTGTTTAATGATAACATATCCATCAACAAATGGAGTGTTTGAAGAGACTATCGCCGAT 106222 Query 159601 ATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAAT 159660 || |||| || ||||| | ||||||||| || ||| | ||||| || || | ||| Sbjct 106221 ATTTGTACTATGATTCATAATGCTGGTGGTCAAGTGTATTTAGATGGAGCTAACATGAAT 106162 Query 159661 GCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTA 159720 || || || || || ||| |||| || ||| || || | ||||| ||||| Sbjct 106161 GCTCAAGTTGGATTATGTCGTCCAGGTGATTACGGTAGCGACGTTTCACATCTTAACTTG 106102 Query 159721 CATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || || || || || || || ||||| |||||||| ||||| | || |||||||| || Sbjct 106101 CACAAAACGTTTTGCATACCTCATGGTGGTGGAGGACCTGGAATGGGACCTATTGGAGT 106043 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 157963 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 158022 || || || |||||| | || || || || || ||| | |||| | |||| ||||| ||| Sbjct 108100 TATACACCATATCAACCAGAAATTTCACAAGGCAGACTTGAAGGTCTATTGAATTATCAA 108041 Query 158023 ACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTATTAGATGAAGCA 158082 || | || || | || ||| | ||||| ||||||||||| |||||||||| Sbjct 108040 ACAATGATATGTGATTTAACTGGAATGGAAATAGCGAACGCATCTCTCTTAGATGAAGGC 107981 Query 158083 ACTGCAGCAGCAGAAGC 158099 ||||||||||||||||| Sbjct 107980 ACTGCAGCAGCAGAAGC 107964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588033330594160