Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1766 194 4e-44 seq2209 179 8e-40 seq2021 109 1e-18 >seq1766 Length=1490156 Score = 194 bits (214), Expect = 4e-44 Identities = 169/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || || |||||||||||||||||||||| |||||| | |||||||| Sbjct 1263479 AACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTC 1263420 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| ||||| || ||||| |||| ||||| || || ||||| |||||||||||||| Sbjct 1263419 TAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTG 1263360 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| || || || |||||||| || ||| ||| |||||||| |||| || || Sbjct 1263359 AATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 1263300 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | |||||| ||||| | |||||| Sbjct 1263299 TCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||||||||| || || || || |||||||||||||||||||||| |||||| | Sbjct 1264171 AGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGA 1264112 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || ||||| | || |||||||| |||||||| |||||| Sbjct 1264111 CCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCT 1264052 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || ||||| || || ||| ||| ||||| | ||| Sbjct 1264051 TTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTA 1263992 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||||||||||| | |||||| ||||| | ||||||| Sbjct 1263991 ATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 188 bits (208), Expect = 2e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| || |||||||||||||||||||||| ||| || | |||||||| Sbjct 1264390 ACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCC 1264331 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || || || || ||||| | || ||||| || |||||||| ||||||||||||||| Sbjct 1264330 AATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGA 1264271 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || || |||||||| || ||| ||| |||||||| |||| || ||| Sbjct 1264270 ATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTT 1264211 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| ||||| | |||||| Sbjct 1264210 CCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| |||||||| ||||| || || |||||||||||||||||||||| |||||| | Sbjct 1263259 AGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGG 1263200 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||| ||||| || ||||| | || ||||| || |||||||| |||||| Sbjct 1263199 CCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCT 1263140 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || |||||||| || || || |||||||| || ||| ||| ||||| | ||| Sbjct 1263139 TTATCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTA 1263080 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || ||||| || | ||||| || || | ||||||| Sbjct 1263079 ATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || |||||||||||||| ||||||| |||||| | |||||||| ||||| Sbjct 1263700 TGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGCTGT 1263641 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | || ||| || ||||||||||| || || || ||||| ||||| Sbjct 1263640 TTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTA 1263581 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || || ||| || || | |||| || ||||| || Sbjct 1263580 GTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAATGGTTTTTCCCGTA 1263521 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 1263520 AGAGTCTTAACGAAAATTTGCAT 1263498 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||||||||| ||||| | | || | |||||||| || || ||||| Sbjct 1263010 GTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCA 1262951 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||| || ||||| ||||| ||||| |||||||||||||| || Sbjct 1262950 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTT 1262891 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || |||||||| || || || || || || || | || || |||||||| ||| Sbjct 1262890 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 1262831 Query 195124 TTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 1262830 TTGACAAAGATCTGCAT 1262814 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||||||||||||||| ||||| | ||| || | |||||||| ||||| Sbjct 1263928 TGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGT 1263869 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || || || | || ||| || ||||| ||||| || || || ||||| ||||| Sbjct 1263868 TTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTATCTTGGATTTTA 1263809 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || || ||| || || | || | || ||||| || Sbjct 1263808 GTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAGTGATGGTTTTTCCCGTA 1263749 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | ||||||| Sbjct 1263748 AGAGTCTTAACGAAAATTTGCATT 1263725 >seq2209 Length=4115427 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||| || |||||||||||||||||||| | || ||||| Sbjct 664086 AGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTTCTT 664145 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || ||||| | |||||| || || |||||||| |||||| Sbjct 664146 CCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCTTCT 664205 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||| || ||||| || || || ||| ||| |||||||| || Sbjct 664206 TTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTG 664265 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || ||||| || | |||||| || || | ||||||| Sbjct 664266 ATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 178 bits (196), Expect = 3e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | |||||| || || ||||| |||||||| ||||| | ||||||||| Sbjct 648209 AGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTTCTT 648268 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || ||||| | |||||||| ||||||||||| |||||| Sbjct 648269 CCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCT 648328 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || || || || || || ||||| ||| ||| ||||| | |||| Sbjct 648329 TTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTA 648388 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| || || | |||||| Sbjct 648389 ATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 163 bits (180), Expect = 6e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | || || || || || ||||||||||| ||||| | ||||| Sbjct 648433 TCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGT 648492 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| ||||| ||||| || || || | ||||| ||||| |||||||| || Sbjct 648493 TCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCC 648552 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| ||||| || ||| || || || || ||||| ||| ||| |||||||| Sbjct 648553 TTCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAG 648612 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || || | |||||| || || | ||||||| Sbjct 648613 TGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | ||| | || || ||||| |||||||||||||| || || || Sbjct 663402 AGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAGAGTGTCCTT 663461 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || || || || || || | |||||| || || |||||||| |||||| Sbjct 663462 CCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCTTCT 663521 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||| || ||| ||||| || || || |||||| ||| |||||||| ||| Sbjct 663522 TTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAACTTCAAGTGTA 663581 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| || | |||||| || || | ||||||| Sbjct 663582 ATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 663620 >seq2021 Length=1035722 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||||||||| || || | | ||| | |||||||| | ||||| || || || | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| ||||| || || || || || |||||||| || |||||||| || || || | Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || || || || ||| |||||||| || | || || || ||||||||||| || | Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 239383 ATATCTGCAT 239392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109447042768577