Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq613 179 4e-40 seq69 176 5e-39 >seq613 Length=358256 Score = 179 bits (198), Expect = 4e-40 Identities = 174/221 (79%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| || ||||| ||| || || ||| |||||||||||||||| |||||| || Sbjct 260002 TGCATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCAT 260061 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || | ||||| || |||||||| | ||| |||||||| |||||||| || ||||| Sbjct 260062 GGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCG 260121 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||| ||||| || ||||||||| |||||||||||||||||| ||||| Sbjct 260122 TTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGA 260181 Query 19401 AATAAAATGTTTTTCATCTG-AGGTTAATGTATTCCAATCA 19440 ||||||||||||||| ||| ||||| ||||||||||| Sbjct 260182 TATAAAATGTTTTTCA-CTGTCAGTTAAATTATTCCAATCA 260221 Score = 132 bits (146), Expect = 5e-26 Identities = 164/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 18766 TTTTTGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 ||||| | |||||||||| |||| |||||| || ||||||| |||||| ||| Sbjct 259380 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 259439 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | | ||| ||||| ||||| | || |||||||| ||||||||| | |||||||||||| Sbjct 259440 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 259499 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG---GTATAGA 18942 || || || || || ||||| ||| |||| |||| || || | || | Sbjct 259500 ATTTTGACAGCATCCTTAATAATTGATGTGACTC---GTTCACAAGATGGTTTTTGTACA 259556 Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 | ||||| ||||| |||||||||||||||||||||| ||||| Sbjct 259557 ATGTGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 122 bits (134), Expect = 1e-22 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| |||||||| |||||||||||||| || || |||||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTatttttattttcttt-aaga 19566 ||| |||||| | |||| |||||||| | |||||||||| | ||||||||| || | Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTTCTTTCAATA 260424 Query 19567 ataggttccattttttgaaaaataataatttcttttcAATA 19607 || || || | || | || || || ||||||| |||| Sbjct 260425 AT-GGCTCTAATTCTGGATTAAATTTATTTTCTTTCAAATA 260464 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||| || | ||||| ||||| | || ||||| || ||||| |||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| |||| || || ||| |||||| |||||||||||||| ||||||| Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||||| | ||| | || ||||| | || | ||||| || | ||||||| || Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | || ||| |||||||||| | || |||| ||||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAATA 259916 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||| |||||||||||| | ||| ||||||||||||| || ||||| || || Sbjct 259202 CATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTC 259261 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||| || ||| |||||| |||||||| ||||||| Sbjct 259262 TAAAGAAATATGTTCCATGAAATCAAACGGATTTT 259296 >seq69 Length=621926 Score = 176 bits (194), Expect = 5e-39 Identities = 222/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 47231 TTGAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcg 47290 ||| ||||| || ||| ||||||||| ||||| | || | |||||| | | Sbjct 549456 TTGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTT 549397 Query 47291 ttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCT 47350 ||||||||| | ||| | |||||||| |||| |||||| ||||| || |||||||| Sbjct 549396 TTCAGTTAAATCTCGTAATAAGTGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCT 549337 Query 47351 ACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGC 47410 | | || ||||| || || |||||||||||||||||||||||||| |||||||| || Sbjct 549336 TCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGC 549277 Query 47411 AGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTAT 47470 ||||||||||| ||||| | ||||| ||| || |||||| ||||||| ||| || Sbjct 549276 CGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 549217 Query 47471 CTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATA 47530 | |||||||||| | || | ||||| ||||||||| | ||| || Sbjct 549216 TTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGTA 549157 Query 47531 TTGAAGAAT 47539 ||| | ||| Sbjct 549156 TTGTAAAAT 549148 Score = 163 bits (180), Expect = 3e-35 Identities = 225/312 (72%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| |||| ||||||| || | ||| || | ||||| |||||||||||||||||| Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 ||||| || | | | || |||| |||||| ||||||||||| | ||||| || ||||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || ||||| | |||||| | | |||||| |||| |||| || || | || Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 547315 Query 48450 CTTCCACTAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 | || || |||| ||| | || | || | || |||||||| || ||| || Sbjct 547314 GTACCTCTTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCTGATTTGCTAAT 547256 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||| | ||| | || |||||||||||||| |||||||| || |||| |||| Sbjct 547255 AAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAA 547196 Query 48569 TAGAAAACAACT 48580 || |||||| || Sbjct 547195 TAAAAAACAGCT 547184 Score = 131 bits (144), Expect = 2e-25 Identities = 210/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 |||| | | || | | |||||||||||| | || | ||| | || | ||| | |||||| Sbjct 547132 ATTTTAAAAAATATACCTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGG 547073 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 ||||||||| |||| | |||||||| || ||||| ||||| ||| | || || Sbjct 547072 AGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAAT 547013 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| ||| ||| | | | || | ||||||||||| || ||||||||||| | Sbjct 547012 ATCTTCACCATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTAC 546953 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| || |||||| || | ||| | |||| | ||||| ||||||||||| || || Sbjct 546952 TTTTCCATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATA 546893 Query 48803 TGAAAAGTCGTTATCATTAATAATTGATGAATTTA--TTCTTTCCTTATGTTTATATACT 48860 ||| || |||||| ||| |||| ||||||| || ||| | | | ||| |||| | Sbjct 546892 ACTAAAATCTCTATCATAAATTATTGCAGAATTTAACTTATTTGCATTTTTTTGTATAAT 546833 Query 48861 A 48861 | Sbjct 546832 A 546832 Score = 120 bits (132), Expect = 3e-22 Identities = 117/148 (79%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| ||||| |||||||||||||||||||||| || | |||| |||||||||| Sbjct 546668 CACTAAAAGTTTTTGTTGTTTCTTTATGAAGATTAGAAATTGCAATTCGTGCAGCTAATA 546609 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | || || ||| || | | |||| ||||| | ||||| Sbjct 546608 TTGCATAATCTGGATGTTTGGTAGT-CATAGTTGCTGCTGTTTCAGCTGCAAGATTATCT 546550 Query 49035 AATTCTTTAGTAGTTACACCTGTATATA 49062 ||||| |||||||||||||| ||||| Sbjct 546549 AATTCAACAGTAGTTACACCTGAATATA 546522 Score = 105 bits (116), Expect = 8e-18 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||||| |||| ||| ||| | ||| |||| ||| | ||| | | |||||| ||||| Sbjct 549062 TCCTTTGCTTACTGGACTACCTTCATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTC 549003 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||| || ||||| || |||| |||||||| |||||||||||||| || || || || Sbjct 549002 ACAGCTGGCTTCTAAAGCACCATAATATAGTGTTTCAAATATTTGAATATTAAGTTTTTG 548943 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 ||||||| |||||| ||||| |||| |||||| | ||||||| Sbjct 548942 TGCTTCTTCACTTTCAAATGGATAACGCATTAAAAGAAATGCATCTGCAAGACCTTGAAT 548883 Query 47720 ACCAATACC 47728 |||||||| Sbjct 548882 TCCAATACC 548874 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||| |||||||| ||| | ||| | |||| || ||||||| || Sbjct 549730 TCCATCCATAAAAATGCATTGAAGTAAGTTTTTCTGTTGTTGGTTTTGCCATATGAACAT 549671 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| ||||||||||| | ||| |||||||| | |||||| | Sbjct 549670 TTAATGATTGCGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAAATTATTT 549611 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 549610 TTTGTGGTATTTCCCAAACTGTTTTATAAA 549581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||||| || || || |||| |||||| ||||| || |||| |||| | | | Sbjct 548651 ACAAACATATTAACAGCAATTGAAGCTAAATTACACACAGCAACTTCATCTGGACTGGAA 548592 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 || || | | ||| | ||||| ||||| || || || || || | |||||||||||| Sbjct 548591 TACTGCACAACTTCTGTACATAAATTACTACTCTTTATTGTTCCTATATTTTGATGATTT 548532 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| || || || || ||||||||| | || ||||| ||||| | |||| Sbjct 548531 GATTTGCG--ATTGCAATGATCTTTATAAAGCATATATGGAGTTCCTGTTTCAACTTGAG 548474 Query 48043 ATTCAATGATAGATTTCCA 48061 | || |||| | |||| Sbjct 548473 AAATAAGAATAGCTGTCCA 548455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091718918840