Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq613 122 1e-22 >seq613 Length=358256 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 ||||| ||||| |||||||||| ||| ||||||||| || |||| |||||| || || Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 | ||||||||||||||||| | || || | || ||| || || | | ||| | | Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | | || ||||| || || |||||| ||||||||| || || | |||| ||| Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 ||||||| ||||| | | ||| || ||||||||| Sbjct 260185 AAAATGTTTTTCACTGTCAGTTAAATTATTCCAATCA 260221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 ||||| ||||||||||| || |||| |||||| |||| | |||| || || || | || Sbjct 259407 CTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGCCTATCATTTCA 259466 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 || || | ||||||| | |||| || ||| ||| | |||||||| |||| || ||| Sbjct 259467 ACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTGACAGCATCCTTAA-TA-ATTG 259524 Query 37128 ACAATAACTTCTTCAGTTGGGGGATATTTTAAA---TATTTAAACAATAAACATGCAAAA 37184 | | ||| |||| | || | || || | | ||| |||| ||||||||||||| Sbjct 259525 A-TGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAACATGCAAAA 259583 Query 37185 TCACAATGTAAACC 37198 ||||||||||| || Sbjct 259584 TCACAATGTAATCC 259597 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 36808 ATTATTTTTCCTTCATTTTTTAAAAATCTTCATCTAAC-GTAAATTTTATTTCCTTATTA 36866 ||||||||| | || |||||| || ||| |||| ||||| || |||| | || Sbjct 259138 ATTATTTTTGTCTTATAAATTAAAATTCAGCAT-TAACAGTAAAATTGCTTTCAATTCTA 259196 Query 36867 CTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTT 36926 | ||| |||||| ||||||||||||||| ||| | |||| || || ||||| || Sbjct 259197 TCTTGCATTACTCCCCATTTTTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTA 259256 Query 36927 CCTTCTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| || |||| |||||| |||||||| ||||| Sbjct 259257 CCTTCTAAAGAAATATGTTCCATGAAATCAAACGGATT 259294 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||| || | ||||| || || | ||||||||| | |||||| ||||| Sbjct 259697 TCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTTTT 259756 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || || || ||| ||| ||||||||||||||| ||||| ||||| || Sbjct 259757 AACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAGCA 259816 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 || | |||| | ||||| | ||| | || ||||| ||| | ||||| || Sbjct 259817 ACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAGCT 259876 Query 37380 TTTAATTTAACACAT-TCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 ||| | ||||||| ||| | |||| || || || || | |||| Sbjct 259877 TTTTTTGCAACACATGGCAAAT-TTTCGATAGCGTTAAATAAGAAGT 259922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592298800973240