Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1766 129 4e-25 seq2021 98.7 8e-16 seq2209 91.5 1e-13 >seq1766 Length=1490156 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || ||| | ||| | || || | ||| ||||||||||| Sbjct 1263460 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAG 1263401 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| ||||||||| | |||| || || ||||| ||| ||| ||||||| Sbjct 1263400 ATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 1263341 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | ||||| ||||||||||| | |||||| || Sbjct 1263340 TCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGACG 1263281 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1263280 AAAATTTGCAT 1263270 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || |||||||| || |||||||||||||| ||||| || ||| | ||| | Sbjct 1263712 CGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCA 1263653 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| ||| ||||| ||||| |||| || || ||||| | |||| |||||||| Sbjct 1263652 TCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTA 1263593 Query 48672 TCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || || ||| ||||| ||| | | || || || || || ||||||| ||||| Sbjct 1263592 TCTTGGAT-TTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAAT 1263534 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| | ||| || || ||||| ||||| Sbjct 1263533 GGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || |||||||| || ||||||||||||||| ||||| || || | ||| | Sbjct 1263940 CGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCA 1263881 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| ||| ||||| ||||| |||| || || ||||| | ||||| |||||||| Sbjct 1263880 TCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTA 1263821 Query 48672 TCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || || ||| ||||| ||| | | || || || || || ||||||| || || Sbjct 1263820 TCTTGGAT-TTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAGTGAT 1263762 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| | ||| || || ||||| ||||| Sbjct 1263761 GGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| |||| || ||||||| || ||||||||||||||| ||||||||| Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | || ||||| ||||| |||| || || ||||| | ||| Sbjct 1262980 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 1262921 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||||||| | | | ||||| ||||| ||| Sbjct 1262920 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACC 1262861 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 1262860 TCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 1262814 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || ||| | || | || |||||||| ||||||||||| Sbjct 1263232 TCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAG 1263173 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || || || ||| || ||| ||| Sbjct 1263172 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTAACATTT 1263113 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || || || || | ||||| |||||||| || | ||||| ||| Sbjct 1263112 TCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACA 1263053 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1263052 AAAATTTGCAT 1263042 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||||||||| || || | || | || ||||| || || || ||||| Sbjct 1264372 TCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAG 1264313 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||||||| | |||| || || ||||| ||| ||| ||||||| Sbjct 1264312 ATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACATTT 1264253 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | ||||| |||||||| || | |||||| || Sbjct 1264252 TCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACG 1264193 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1264192 AAAATTTGCAT 1264182 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| || || |||||||||||||||||||| || ||| | ||| Sbjct 1264171 AGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGA 1264112 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || || || ||||| |||| || |||||| || | |||| || || Sbjct 1264111 CCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCT 1264052 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | || || || || || || || | ||| Sbjct 1264051 TTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTA 1263992 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | |||||| || ||||| ||||| Sbjct 1263991 ATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 >seq2021 Length=1035722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||| || || |||| | | || | || || || ||||| || ||||| | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || || ||||| | || | || || || || ||| || ||| ||| Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || || || | || || ||||| |||||||||||||| |||| Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 239383 ATATCTGCATCGTG 239396 >seq2209 Length=4115427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| |||| ||| || || |||||||||||||||||||| || || ||| | || Sbjct 664091 CAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTTCTTCCATC 664150 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | || || || ||||| |||| ||| || ||||| | |||| || || || || Sbjct 664151 TTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCTTCTTTATC 664210 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| |||||| | | || ||||| || || || || | || || || Sbjct 664211 TTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGT 664270 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | |||||| ||||| || ||||| Sbjct 664271 TTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| || ||||| || || || ||||||||||| ||||| || Sbjct 648428 CCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAG 648487 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || || | ||| ||||| ||||| |||| || || || || | ||| Sbjct 648488 AGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGA 648547 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| |||||| | | | ||||| || || || Sbjct 648548 ATTCCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACT 648607 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | |||||| |||||||| ||||| Sbjct 648608 TCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380926313652213