Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1766 109 5e-19 seq2209 107 2e-18 >seq1766 Length=1490156 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| |||||| | || || ||||| ||||| ||| ||| |||| Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | || | || || |||| || || ||||| || | || |||| Sbjct 1263101 AGATACCATTGAAAATGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCTGATC 1263159 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||||||| | |||||||| || ||||| ||||||||| ||| | ||||||| | Sbjct 1263160 AACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACA 1263219 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||||||||||| || || | || ||| || | || || || || Sbjct 1263220 ATATTCAAAAAGAATCTACACTTCATCTTGTTTTACGACTTCGTGGTGGTAT 1263271 Score = 107 bits (118), Expect = 2e-18 Identities = 170/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || ||||| ||||| ||| ||| |||| Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||| || | || ||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCTCCTGATCA 1264300 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||||||| | |||||||| || ||||||||||||||| | | ||| | ||||||| Sbjct 1264301 ACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CCGATTAC 1264358 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG--GATAAT 28786 || |||||||||||||| ||||| ||| | ||| | | | ||||| || |||||| Sbjct 1264359 AATATTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCGATAAT 1264416 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | ||||| ||||| ||||| ||| ||| |||| Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||| || | || ||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAA-GACAAAGAAGGTATTCCACCTGATCA 1263388 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| |||||||| || ||||| | |||||| | ||| | ||||||| || Sbjct 1263389 ACAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAA 1263448 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||||||||||| || || || Sbjct 1263449 TATTCAAAAAGAATCAACCCTCCA 1263472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || || || || ||||| ||| ||| |||| Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || |||||||| || | || || | Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCTGACC 1264071 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 |||||||| | |||||||| || |||||||| |||||| | ||| | ||||||| | Sbjct 1264072 AACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACA 1264131 Query 28732 ACATTCAAAAAGAATCTACTCTGCA 28756 | |||||||||||||| || || || Sbjct 1264132 ATATTCAAAAAGAATCAACCCTCCA 1264156 >seq2209 Length=4115427 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || ||||||||| ||| ||| ||||| Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || || | || || ||||| ||| | || |||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGATTCAA-GATAAAGAAGGAATTCCTCCAGATCA 648308 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| || |||||| | |||||| | |||| | | |||||||| Sbjct 648307 ACAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 648248 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||||||||| || ||| | || || ||| | ||||| || || Sbjct 648247 TATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGGAAT 648197 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || || |||||||| || ||| ||| |||| Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCA 664185 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | |||||||| || |||||| | |||||| | ||| | | ||||| || Sbjct 664184 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 664125 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||||||||| || ||||||| ||| | ||||| || || Sbjct 664124 TATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGGAAT 664074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425392196186349