Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq69 127 1e-24 >seq69 Length=621926 Score = 127 bits (140), Expect = 1e-24 Identities = 212/304 (70%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||| ||||| |||||||| || ||||||||||||| ||||||||||||||||| ||||| Sbjct 547486 ATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAATATATAGC 547427 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| || |||||| ||| |||||||| || |||| || || | |||| | || Sbjct 547426 AAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATAC 547367 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT----GCTATGAATCTTGGATC 26174 | | | |||||||| || ||| | || | || ||| ||||| | || | | Sbjct 547366 TCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTAT---TGGTGTA-C 547311 Query 26175 CTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTG 26234 || | | || |||| || ||| || || || |||||||| |||| |||| || Sbjct 547310 CTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTG 547251 Query 26235 CACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAA 26294 |||| | | ||| || ||||||||| || ||||| | ||||| |||||||| Sbjct 547250 CACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAATAAAA 547191 Query 26295 AACA 26298 |||| Sbjct 547190 AACA 547187 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 24964 CCAAAGATTAATTTTTTCA---AGATCTC-TAATCAAGTGTTTATTTATGATAATAAATT 25019 |||||||| ||||||| | ||||| |||| ||||| ||||| | ||| | Sbjct 549408 CCAAAGATC---TTTTTCAGTTAAATCTCGTAAT-AAGTGAGGATTTACAACTTGAAACT 549353 Query 25020 CTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTAT 25079 |||| |||| ||||||||| | | | || ||| ||||||| | | ||||||||| Sbjct 549352 CTCCTGACAGTACTCTTCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTAT 549293 Query 25080 TTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCA 25139 ||||||| ||||| | || |||||||||||||| ||| ||||| | |||||||| | Sbjct 549292 TTCCTAAAATTTGTGCCGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAA 549233 Query 25140 AACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC---TAAATTA 25186 |||| |||| |||| | || ||| || || |||||| ||||||| Sbjct 549232 CTCCATGTTTAGCAATTTTTTTTTTCAAAATAGTCCAATCCCATAAATTA 549183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032502978325