Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1632 123 3e-23 >seq1632 Length=1761243 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 139259 TAGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTG 139318 || ||| || | ||||||||| | ||||| | | ||||||||||||| || |||||||| Sbjct 107302 TATTCCTTCAGGTCCATGATATACAGCATACATTGCAGACATATTTGCCAGTAGTGCTTG 107361 Query 139319 TGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAG 139378 ||| || || || || || || ||||||||||||||||||||||| |||| ||||| || Sbjct 107362 TGCGGTACAAATATTGCTAGTAGCTTTGTCTCTTCTAATATGCTGTTCTCGTGTTTGAAG 107421 Query 139379 TGCTAATCTGTATGCA 139394 ||||| | |||||| Sbjct 107422 AGCTAAGCGATATGCA 107437 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||||| |||||||| ||||| || || || || || || || Sbjct 106043 ACTCCAATAGGTCCCATTCCAGGTCCTCCACCACCATGAGGTATGCAAAACGTTTTGTGC 106102 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || ||||| | || || ||| || |||| ||| || || || || ||| Sbjct 106103 AAGTTAAGATGTGAAACGTCGCTACCGTAATCACCTGGACGACATAATCCAACTTGAGCA 106162 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| || ||||||||| | ||||| || |||| || Sbjct 106163 TTCATGTTAGCTCCATCTAAATACACTTGACCACCAGCATTATGAATCATAGTACAAATA 106222 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | ||| | |||||| || |||| || ||||||||||| ||||| | ||| || Sbjct 106223 TCGGCGATAGTCTCTTCAAACACTCCATTTGTTGATGGATATGTTATCATTAAACAAGA 106281 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 || |||||||||||||| |||||||||| ||||||||||| |||||| | ||| || Sbjct 107964 GCTTCTGCTGCTGCAGTGCCTTCATCTAAGAGAGATGCGTTCGCTATTTCCATTCCAGTT 108023 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 | || || | ||||| ||||| |||| | |||| | ||| || || || || || Sbjct 108024 AAATCACATATCATTGTTTGATAATTCAATAGACCTTCAAGTCTGCCTTGTGAAATTTCT 108083 Query 139983 GCTTGATAGGGAGTGTA 139999 | |||||| || || || Sbjct 108084 GGTTGATATGGTGTATA 108100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578980805686120