Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq69 86.0 7e-12 >seq69 Length=621926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 232/350 (66%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 75872 GATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTAC 75931 ||| | |||| |||||||| | || || || || ||||| |||||||||||||| Sbjct 548449 GATTTATGGACAGCTATTCTTATTTCTCAAGTTGAAACAGGAACTCCATATATGCTTTAT 548508 Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 || ||| ||| || || || || | ||| | |||||||| ||||| ||| Sbjct 548509 AAAGATCATTGCAATCGCAAATCAAATCATCAAAATATAGGAACAATAAAGAGTAGTAAT 548568 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 | || || ||| || | |||| | | ||||| ||||| || ||||| || Sbjct 548569 TTATGTACAGAAGTTGTGCAGTATTCCAGTCCAGATGAAGTTGCTGTGTGTAATTTAGCT 548628 Query 76052 TCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT 76111 ||||| || || | || ||| ||| | || || ||||||| | |||||||| Sbjct 548629 TCAATTGCTGTTAATATGTTTGTAAATCCCATTAATCAAACATTTGATTTTCAAAAACTT 548688 Query 76112 CATGAAA-TCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 | ||||| | ||||| |||||||| ||||| || | | || || |||| ||| Sbjct 548689 C-TGAAAGTAACAAAAATTGTTACTTGTAATCTGGACAAAATTATCGATGTCAATTATTA 548747 Query 76171 TCCCGTT-GAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 |||| || ||| || |||| || ||| | |||| |||||||| ||| Sbjct 548748 TCCCATTCCAGA-AGCAAGAAAATCAAATTTTAGACATAGACCTATAGGT 548796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 || || ||||| ||||||||||| || || |||||||| || || |||||||||| | Sbjct 549247 TTAATTGCACCTATGCCAACAGCATCAACGGCACAAATTTTAGGAAATAATGAATCTATA 549306 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTT 76615 ||||||||||| | || |||||| |||||| || |||| |||||| Sbjct 549307 GAACCATACACCAGCAATATCTACACAAGAAGAGTACTGTCAGGAGAGTTT 549357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596551471741280