Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2337 113 1e-19 seq2143 111 5e-19 seq1965 95.1 4e-14 seq613 91.5 4e-13 seq2332 87.8 5e-12 seq435 86.0 2e-11 seq3 86.0 2e-11 >seq2337 Length=7230 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || ||||||| | ||||| ||||||| || ||||||||||| Sbjct 6388 ATTTCTAACTGTTCCATCATAATGCACCATAACAGATTCCATAGCTTTTATTAAACGACG 6329 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||||||||| | ||||||||||| |||||||| ||||| |||||||||| Sbjct 6328 TTGAATATAACCAGTTTCTGCAGTTTTTACAGCAGTATCAATAAGACCTTCACGACCACC 6269 Query 302658 CATAGCATGGAA 302669 ||||||||| || Sbjct 6268 CATAGCATGAAA 6257 >seq2143 Length=871716 Score = 111 bits (122), Expect = 5e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||| | ||||| ||||| ||||| ||||| || | | ||| |||| || || | Sbjct 286663 CTTTTTCTTCCAACGGCATCGATTTCATCAATAAATAATATACATGGAGCATGTTTCCGT 286722 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || | |||||| | |||| || | |||| |||| ||||||| ||||||| | |||| Sbjct 286723 GCCAATGCAAACATATCTCGAACTCTTGATGGACCAACACCAACAAACATTTCCAAAAAT 286782 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || | ||||| ||| || | |||||||||||| || ||| ||| | || | Sbjct 286783 TCTGAGCCTGATACGCTAATAAAAGGTACATTTGCTTCACCAGCTGTAGCCTTAGCTAAT 286842 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| ||||| ||||| ||||| || Sbjct 286843 AATGTTTTACCAGTTCCGGGTGGGCC 286868 >seq1965 Length=1097934 Score = 95.1 bits (104), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 289129 ATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACT 289188 |||||| ||||||| | | | | | |||| |||| |||| ||||| || |||||| Sbjct 370217 ATTTCTTCAAATTCTGGTCCAGCTGCATGAAAAAATGGTACACCAGCTTCACCAGCTACT 370276 Query 289189 GCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || ||||| | | ||| || |||||||| |||||||| |||||| || || || ||| Sbjct 370277 GCTCTCGCTAACAATGTTTTTCCTGTTCCTGGTGGTCCTACTAATAATACACCTTTAGGT 370336 Query 289249 ACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC- 289304 | || || ||| ||||| | |||| || || | ||||||||||| ||||| || Sbjct 370337 AGCTTCGCACCAAGTGCAGA---AAATTTTTCTGGATTTTTTAAAAATTCGACAATATCA 370393 Query 289305 CTCAAGTTCATATTTTGCCTC 289325 || || ||| | ||| || || Sbjct 370394 CTTAA-TTCTTGTTTAGCTTC 370413 >seq613 Length=358256 Score = 91.5 bits (100), Expect = 4e-13 Identities = 158/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 133416 TATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAA 133474 |||| ||||| || | ||||| || ||| || ||| ||| || | ||||| | || Sbjct 259916 TATTTAACGCTATC-GAAAATTTGCCATGTGTTGCAAAAAAAGCTCATTGGGCGTTAAAT 259858 Query 133475 TGGAT---CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTA 133531 ||||| ||| || | |||| | |||| || ||| | ||||||||||||| |||| Sbjct 259857 TGGATAAACCATGAAA---GTGCTACTTTTCCTGAACGTGTAGTTGCTTTTGCTGCAGTA 259801 Query 133532 GAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATT 133591 || || ||||| || |||||| ||| | ||||||| ||| | |||||| | ||| || Sbjct 259800 GAAGGTATTTTCTTTAGTGGTAGTTTCGCCGCTATTTTCTGGTTAAAAAAGAGAGGTCTT 259741 Query 133592 CTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 | || ||||| || || || |||||||| || || |||| Sbjct 259740 ATGCCAGGACTTACATTCAGCAATGAGCTTATTTCTAGAGATGAGG 259695 >seq2332 Length=772421 Score = 87.8 bits (96), Expect = 5e-12 Identities = 118/164 (72%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | |||| | ||||| |||||||||||||| | | | |||||| || | Sbjct 82705 TAGCACCATATCCAATTAAGCAATCTCGTTCCATTTCACCTAATCTTAAACCACCTTCCT 82764 Query 233331 ----TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGA 233386 | ||||| || | || |||||| ||||| |||| |||||| || |||||||| Sbjct 82765 TGGCTCGACCTCCCGT----TGGTTGACGTGTTAATACAGCTCTTGGTCCTCGAGCACGA 82820 Query 233387 TAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || |||||||||| |||||||| |||| | | |||||| Sbjct 82821 GCATGCATTTTATCTTGTACCATATGTTTCAATTTTTGATAATA 82864 >seq435 Length=416815 Score = 86.0 bits (94), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || || || ||| | || || ||| Sbjct 229265 ATAGTCATACGTGATGGAATAGCATGAGGATTAATTATAATATCTGGTGTAAGACCTTCA 229206 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 | || |||||||||| || || ||| || |||| ||| || |||||||| || Sbjct 229205 CACGAAAATGGCATATCCTCTT-GTCTATATTGAATTCCGCAAGTACCTTTTTGTCCATG 229147 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || |||||||| || ||| ||||| || || | | | ||||| Sbjct 229146 ACGTGAAGCAAATTTATCACCGATTTGTGGAATACGAACGCTGCGTACTCTTATTTTACA 229087 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || ||||| || |||| ||| Sbjct 229086 AAATTTGTATCCTTCACTGTT 229066 >seq3 Length=676877 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 380915 TATGGTTTATTAAGGGTGATACATCAA---ACAGAAGGCTAAAGGCACAGAATGTAAAAA 380971 ||||||||||||| || || || || | |||| ||| | | || |||| | | Sbjct 624796 TATGGTTTATTAAAGG--ATCCACAAATGCAAAGAAAT-TAAGCGAAAAGGATGTTCATA 624740 Query 380972 TCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATAACGAAG 381031 | ||| ||| ||| || ||||||||||||||||| ||||| | | ||| |||| Sbjct 624739 TTTGGGATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGGGAAG 624680 Query 381032 AAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTT 381075 ||| || | ||||||||||| |||||||| |||||||||||| Sbjct 624679 AAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTT 624636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471771757021247