Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq1236 102 1e-16 >seq3 Length=676877 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 172460 ||| | |||||| |||||||||| || || || |||| |||||| || | | |||| Sbjct 624803 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGCGAAAAGGATGTT 624744 Query 172461 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 172520 | ||||| ||| ||| |||| ||||| |||||||||| || || |||| || || Sbjct 624743 CATATTTGGGATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGG 624684 Query 172521 AAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACAT 172565 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 624683 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 624639 >seq1236 Length=152982 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 || ||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 61058 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 60999 Query 166013 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 60998 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 60940 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCTGC 166131 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || Sbjct 60939 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 60880 Query 166132 ATCAAGATATATTTATACCA 166151 | ||||||||| ||||| Sbjct 60879 TCCTCGATATATTTTTACCA 60860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632470380222280