Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2209 122 7e-23 seq1766 100 2e-16 >seq2209 Length=4115427 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || |||||||| || | ||| || || Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | ||||| |||||| || |||||||| | || ||||| Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCA 664185 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | || | ||| || ||||| || || |||| |||||| | | |||||||| Sbjct 664184 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 664125 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||| | || |||| || ||||| ||||| |||| Sbjct 664124 TATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGGAA 664075 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || ||||| ||||||||| | ||| || || Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| || |||||||| | || |||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 648307 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| || || |||| ||||| | | ||||| || Sbjct 648306 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAT 648247 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||||||||| | ||| | ||||| ||||| |||||||||| Sbjct 648246 ATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGGAA 648198 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || || || ||||| | ||| || || Sbjct 663620 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 663561 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | ||||| |||||| || |||||||| | || ||||| Sbjct 663560 GGATACAATAGAAAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 663501 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | |||| ||| || ||||| || || |||| || ||| | |||||||| Sbjct 663500 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACAA 663441 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| ||||||||||| |||||| |||| || ||||| ||||| ||| Sbjct 663440 TATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGGA 663392 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || |||||||| || | ||| || || Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | ||||| |||||| || |||||||| | || ||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| || | |||| ||| || ||||| || || |||| |||||| | | ||||| || Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| | || | ||||| ||||| |||| || Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || ||||| ||||||||| | ||| || || Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| || |||||||| | || ||||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 663728 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || ||||| || || |||| |||||| | | ||||| || Sbjct 663727 CAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAAT 663668 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||| ||||| | || | || || ||||| ||||| |||| Sbjct 663667 ATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGAA 663619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | || || ||||| || || | ||| || || Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | ||||| |||||| ||||||||||| | || || || Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCA 648536 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| ||| ||||||||||| || |||| ||||| | | ||||| || Sbjct 648535 GCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAA 648476 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | || | || || ||||| |||| || Sbjct 648475 TATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 >seq1766 Length=1490156 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||||||||| | || || ||||| ||||| | ||| || || Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| || ||| || |||||||| | || ||||| Sbjct 1263101 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 1263160 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||| | || | ||| ||||||||| |||| |||| | | || | | |||||||| Sbjct 1263161 ACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 1263220 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||||||||| | || | || ||| |||| || || || Sbjct 1263221 TATTCAAAAAGAATCTACACTTCATCTTGTTTTACGACTTCGTGGTGG 1263268 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||| | || || ||||| ||||| | ||| || || Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| ||||||||||| || |||| | || | | |||||||| Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 1263450 ATTCAAAAAGAATCAAC 1263466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | ||||| ||||| ||||| | ||| || || Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || ||||| |||| |||| | ||| | | |||||||| Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACAAT 1264361 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 1264362 ATTCAAAAAGAATCGAC 1264378 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || ||||||||||| || || || ||||| || || | || ||| ||| | Sbjct 1262814 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 1262873 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | |||||| ||| ||| ||||| ||||| | || ||||| Sbjct 1262874 -GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCA 1262932 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| |||||||| || || |||| | ||| | | ||||| || Sbjct 1262933 GCAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAA 1262992 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 ||||||||||| || || || || Sbjct 1262993 TATTCAAAAAGAGTCAACATTACA 1263016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829368406483