Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1766 93.3 3e-14 >seq1766 Length=1490156 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||| || || || | ||| || | || |||| || ||| || ||||| ||||| || Sbjct 1263042 TTCCACCTCTTAAACGCAGTACTAAATGTAATGTTGA-CTCTTTTTGAATATTATAATCA 1262984 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 |||| | || |||| || ||||| || || || ||||||| || |||||| ||| | Sbjct 1262983 GATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGT 1262924 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | ||||| ||| || | | || | || |||||| Sbjct 1262923 GGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCA 1262864 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | ||||| || || || || | || || ||||||||||||||||| Sbjct 1262863 ACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGAT 1262811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683150434789