Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2209 109 4e-19 seq1766 87.8 1e-12 >seq2209 Length=4115427 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||||||| | || || |||||||| || | ||| || ||| Sbjct 664304 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664245 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 664244 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCA 664185 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || ||||| || || || | | |||| | | || ||||| Sbjct 664184 GCAACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAA 664125 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||| || ||||| | || |||| |||||| | ||||| |||| Sbjct 664124 TATTCAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGAGGTGGAA 664075 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||||||| | || || || || ||||| | ||| || ||| Sbjct 663620 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTC 663561 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 663560 GGATACAATAGAAAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCA 663501 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || ||||| || || || | | ||| | || ||||| Sbjct 663500 GCAACGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACAA 663441 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || || ||||| |||||| |||| |||||| | ||||| ||| Sbjct 663440 TATTCAGAAAGAATCTACATTGCACTTGGTATTGAGACTTCGAGGAGGA 663392 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||||||| | || ||||| ||||||||| | ||| || ||| Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| |||||| ||||||||||| | || |||||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 663728 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||| || ||||| || || || | | |||| | | || || || Sbjct 663727 CAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAAT 663668 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||| || |||||||| | || | || |||||| | ||||| |||| Sbjct 663667 ATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGAA 663619 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||||||| | || ||||| ||||||||| | ||| || ||| Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| |||||| ||||||||||| | || ||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAA 648307 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | ||| |||||||| || || || | | ||| | | || || || Sbjct 648306 CAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAT 648247 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 ||||| || || ||||| | ||| | ||||||||| | |||||||||| |||| || Sbjct 648246 ATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGGAATGTATAATCAT 648187 Query 107796 AT 107797 || Sbjct 648186 AT 648185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||||||| | || || |||||||| || | ||| || ||| Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || || | |||| ||| || ||||| || || || | | |||| | | || || || Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | || | ||||||||| | |||| || Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| || ||||||||||| |||||||| ||| | ||| || ||| Sbjct 648885 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 648826 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || | | | |||||| |||||| |||||||| || | || ||| Sbjct 648825 TCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 648766 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | |||| ||| || ||||| || || || | | |||| | | || || Sbjct 648765 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 648706 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||| || |||||||| | || | || |||||| | ||||| |||| Sbjct 648705 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGAA 648654 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||||||||||||| | || || ||||| || || | ||| || ||| Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | ||||| |||||| || |||||||| | || || || Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCA 648536 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | |||| ||| ||||||||||| || || | | ||| | | || || || Sbjct 648535 GCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAA 648476 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| ||||| | || | || |||||| | |||| || Sbjct 648475 TATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 >seq1766 Length=1490156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||||||||||||||| | || || ||||| ||||| | || Sbjct 1263031 TAAGAGGTGGAA--TGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGA 1263088 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | || ||| ||||| | | | || ||| || ||| ||||||||||| | Sbjct 1263089 AGTTGAAGCTTCAGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTAT 1263148 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || ||||| |||||| | || | ||| ||||||||| |||| || | | || | Sbjct 1263149 TCCTCCTGATCAACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCT 1263208 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTAC 107752 | || ||||| |||||||| || ||||| Sbjct 1263209 TTCCGATTACAATATTCAAAAAGAATCTAC 1263238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||||||| | || || ||||| ||||| | ||| || ||| Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | |||||| ||| ||| || |||||||| | || ||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||||||||| || || | || | | || ||||| Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||| || || || Sbjct 1263450 ATTCAAAAAGAATCAAC 1263466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || ||| | || || |||||||| || | || || || Sbjct 1263725 AATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATC 1263784 Query 107615 CGATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || ||||| ||| || ||||| || || | ||| |||| Sbjct 1263785 TGATACTATTGAAAATGTTAAAACTAAA-ATCCAAGATAAGGAGGGTATTCCCCCAGATC 1263843 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| ||| | |||| ||| |||||||||||||| || | ||| | |||| || | Sbjct 1263844 AGCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATA 1263903 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 | |||||||| ||||| || | || | || ||| | ||| |||| |||| Sbjct 1263904 ATATTCAAAAAGAGTCGACACTACATTTAGTATTGCGTTTGAGAGGTGGAA 1263954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864982152959