Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2209 168 1e-36 seq1766 159 5e-34 seq2420 95.1 2e-14 >seq2209 Length=4115427 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || |||||||| || ||| |||| || ||| | | Sbjct 664074 TGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAG 664015 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | |||||||| ||| || ||| ||||||||| |||||||| ||||||| Sbjct 664014 ATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAAC 663955 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | |||||||| || |||||| | || ||| |||||| | |||||||||||| Sbjct 663954 AACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATA 663895 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || |||||||||| || || | |||||||||| Sbjct 663894 TCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGGTA 663847 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || |||||||||||||| || || | || || ||| | | Sbjct 648881 TGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCTTCAG 648822 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||||||| ||| || ||| |||||| || |||||||| ||||||| Sbjct 648821 ACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGATCAAC 648762 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || |||||| | || ||| |||||| | |||||||||||| Sbjct 648761 AACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATA 648702 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || ||| | ||| ||||||| || | ||||||| Sbjct 648701 TTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGG 648656 Score = 138 bits (152), Expect = 2e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || |||||||| || ||| |||| || ||| | | Sbjct 664302 TGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAG 664243 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | |||||||| ||| || ||| ||||||||| ||||| |||||||| | Sbjct 664242 ATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCAGC 664183 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || |||||| | || ||| ||||| | ||||||| |||| Sbjct 664182 AACGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAATA 664123 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | ||||||||||| ||| | ||| | ||||| Sbjct 664122 TTCAAAAAGAATCTACTCTTCATCTGGTATT 664092 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| || || |||| || ||| | | Sbjct 648653 TGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTCAG 648594 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||||||||| ||| || || |||||||| ||||| || || || | Sbjct 648593 ACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCAGC 648534 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||| |||| ||| ||||| | |||||||||||| Sbjct 648533 AACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAATA 648474 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || ||||||||||||| || | |||||||||| Sbjct 648473 TTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGGTA 648426 Score = 123 bits (136), Expect = 4e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || ||||| | || || ||| | | Sbjct 663846 TGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAG 663787 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| ||| || ||| ||||||||| ||||| || ||||| | Sbjct 663786 ATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGC 663727 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || ||||| || |||||| | || ||| |||||| | |||||||||||| Sbjct 663726 AACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATA 663667 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || ||| | ||| ||||||| || | ||||||| Sbjct 663666 TTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGG 663621 Score = 120 bits (132), Expect = 5e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || ||||| | || || ||| | | Sbjct 648425 TGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAG 648366 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||| || ||| ||||||||| ||||| || ||||||| Sbjct 648365 ACACAATAGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCAGATCAAC 648306 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||| |||| ||| ||||| | |||||||||||| Sbjct 648305 AACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAATA 648246 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || |||||||| || | || ||||| || Sbjct 648245 TTCAGAAAGAATCTACACTTCACTTAGTGTT 648215 >seq1766 Length=1490156 Score = 159 bits (176), Expect = 5e-34 Identities = 173/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || || | |||||||| ||||| |||||||| ||| | || || || | | | Sbjct 1262815 TGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA- 1262873 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||||||| ||||| ||| || ||||| |||||||| ||||| Sbjct 1262874 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 1262933 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || ||||| ||||||||| |||| ||| | || ||| | ||||||||| Sbjct 1262934 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAAT 1262993 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || |||||||| || || | ||||||||| | || |||||||| || Sbjct 1262994 ATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTAAGAGGTGG 1263040 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| |||||| |||| || ||| | | Sbjct 1263271 TGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTG 1263330 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| ||||| ||| |||||||| |||||||| ||||||| Sbjct 1263331 ATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAAC 1263390 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| |||||||| |||| ||| | | || | | ||||| |||| Sbjct 1263391 AGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAATA 1263450 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || ||||| | || |||| | |||| |||| Sbjct 1263451 TTCAAAAAGAATCAACCCTCCATCTTGTTCTACGTCTTCGAGGTGGTA 1263498 Score = 154 bits (170), Expect = 2e-32 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || |||||||| ||||| | || || ||| ||| Sbjct 1263499 TGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT- 1263557 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||| |||| |||||| ||| ||| || || ||||| || ||||| Sbjct 1263558 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1263617 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| |||||||| | || ||| | | || | | ||||||||| Sbjct 1263618 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAAT 1263677 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||||||||| || | ||||||||||| || || ||||| || Sbjct 1263678 ATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGG 1263724 Score = 154 bits (170), Expect = 2e-32 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || |||||||| || ||| | || || ||| ||| Sbjct 1263727 TGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATCT- 1263785 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| ||||||| |||| |||||| ||| ||| || || ||||| || ||||| Sbjct 1263786 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCAG 1263845 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| |||||||| | || ||| | | || | | ||||||||| Sbjct 1263846 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGGATTATAAT 1263905 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || |||||||| ||||| | ||||||||||| || || ||||| || Sbjct 1263906 ATTCAAAAAGAGTCGACACTACATTTAGTATTGCGTTTGAGAGGTGG 1263952 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | |||||||| || |||||| | || || ||| | || Sbjct 1263955 TGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTCCG 1264014 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| |||||||| ||||| || || |||| Sbjct 1264015 ATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAAC 1264074 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||| || ||||||||||| ||| | | || | | ||||| |||| Sbjct 1264075 AGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAATA 1264134 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || ||||| | || || ||| | | || |||| Sbjct 1264135 TTCAAAAAGAATCAACCCTCCATCTTGTTTTGCGACTTCGTGGTGGTA 1264182 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || |||||||| |||||| |||| || ||| | | Sbjct 1264183 TGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTG 1264242 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| ||||| ||| |||||||| ||||| || ||||||| Sbjct 1264243 ATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAAC 1264302 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||| || |||||||| || ||| | || | | ||||| |||| Sbjct 1264303 AGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACAATA 1264362 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAA 146264 | ||||||||||||||| | || | ||| | || | |||| ||| |||| Sbjct 1264363 TTCAAAAAGAATCGACTCTTCACCTTGTACTTCGTCTCCGAGGTGGTCGATAA 1264415 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || |||||||| |||||| | || || ||| | | Sbjct 1263043 TGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCAG 1263102 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| || ||||||||| ||||| || ||||||| Sbjct 1263103 ATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCAAC 1263162 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||| |||||||| || || ||| | || | | ||||| |||| Sbjct 1263163 AGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAATA 1263222 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | ||| | || |||||| | | || |||| Sbjct 1263223 TTCAAAAAGAATCTACACTTCATCTTGTTTTACGACTTCGTGGTGGTA 1263270 >seq2420 Length=677074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| | |||||||||| | || ||||| || |||||||| || ||| ||| Sbjct 459102 AGGAATTCCACCTGGTCAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGTAG 459161 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 || | ||||||||||||| || || ||||| || | ||||| || |||| ||||| Sbjct 459162 GACACTTTCAGATTATAATATTCAGAAGGAATCTACATTACATTTGGTGCTACGTTTAAG 459221 Query 146252 AGGAGGT 146258 || ||| Sbjct 459222 GGGTGGT 459228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786142510368520