Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1766 170 1e-37 seq2209 154 1e-32 seq2021 134 1e-26 seq2420 91.5 1e-13 >seq1766 Length=1490156 Score = 170 bits (188), Expect = 1e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||||||||| || ||||| || || || ||||||||||| |||||||||| Sbjct 1263953 TCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGA 1263894 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || ||||| |||||| | ||||||||||||||||| || || Sbjct 1263893 AAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGG 1263834 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||| || ||||| | ||| ||| ||| |||| | ||| ||||| ||| || Sbjct 1263833 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263774 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || ||||| || || | || ||||| || || |||||| Sbjct 1263773 CTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCATT 1263725 Score = 168 bits (186), Expect = 5e-37 Identities = 169/217 (78%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || |||||||||||||| || ||||| | || || || Sbjct 1264397 ACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCC 1264338 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | |||||||| || ||||| || |||||||| ||||| Sbjct 1264337 ATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTT 1264278 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| ||| ||| |||| | || |||||| ||| ||||||||||| | Sbjct 1264277 GTCTTG-AATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAA 1264219 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || | |||||||| || || ||||| Sbjct 1264218 TAGTTTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || |||||||| || ||||| | || || ||||||||||| |||||||| | Sbjct 1263041 TCCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGA 1262982 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || |||||||| |||||| | ||||||||||||||||| || || Sbjct 1262981 TAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 1262922 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| |||||| | ||| ||| |||| | || || || || | Sbjct 1262921 AATTCCTTCCTTGTCTTG-AATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAA 1262863 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| ||||| || || || ||||| ||||| |||||||| Sbjct 1262862 CCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 1262814 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||||||||| || ||||| || || |||||||||||||| |||||||| | Sbjct 1263725 TCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGA 1263666 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || ||||| |||||| | ||||||||||||||||| || || Sbjct 1263665 AAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGG 1263606 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||||||| || ||||| | ||| ||| ||| |||| | ||| ||||| ||| || Sbjct 1263605 AATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263546 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || | || ||||| || || ||||| Sbjct 1263545 CTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 159 bits (176), Expect = 3e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || |||||||||||||| || ||||| | || || ||| Sbjct 1263485 ACGTAGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACC 1263426 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || ||| | |||| ||| || ||||| || |||||||| ||||| Sbjct 1263425 ATCTTCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTT 1263366 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||||| ||| ||| |||| | || |||||| ||| ||||||||||| | Sbjct 1263365 GTCTTG-AATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAA 1263307 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || | ||||| || || || ||||| Sbjct 1263306 TAGTTTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| || || |||||||||||||| || ||||| | || || ||| | Sbjct 1264168 CGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 1264109 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | |||||| |||||| | |||||||| || || || || |||||||| |||||| Sbjct 1264108 TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTG 1264049 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| |||| | ||| || ||| ||| ||||| | ||| || Sbjct 1264048 TCTTG-AATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAAT 1263990 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || | ||||| || || || |||||| Sbjct 1263989 AGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 140 bits (154), Expect = 2e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || |||||||||||||| || ||||| | || || || ||| || | || Sbjct 1263245 ATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTG 1263186 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||| || ||| | |||||||| || ||||| || |||||||| ||||| || || ||||| Sbjct 1263185 TTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTG-AATTT 1263127 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| ||| |||| | || || ||| ||| ||||| | ||| |||||||| |||| Sbjct 1263126 TAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAG 1263067 Query 29762 TTAAGGTTTTAACAAATATCTGCATT 29787 | | ||||| ||||| || |||||| Sbjct 1263066 TGAGTGTTTTGACAAAAATTTGCATT 1263041 >seq2209 Length=4115427 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | | || ||| ||||| || || ||||| ||||| || |||||||| | Sbjct 663849 CCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGAG 663908 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || ||||||||||||||| | ||||||| ||| ||||| || ||| Sbjct 663909 AGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 663968 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| ||| || | || ||| | |||| ||| || ||| ||| || Sbjct 663969 ATTCCTTCTTTATCTTG-AATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAAC 664027 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| || ||||| ||||| | ||||| ||||| || |||||| Sbjct 664028 TTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664076 Score = 152 bits (168), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || ||||| ||||| |||||||| | | || | | ||| || ||||| Sbjct 648679 ATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTG 648738 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 |||||||||| | ||||| | ||| ||||| || ||||| |||||||| ||||| ||| | Sbjct 648739 TTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCTTG-AATCT 648797 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| ||| | |||| ||||| ||| ||| ||||| | || || ||||| || | Sbjct 648798 TAGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGTTTTTCCTG 648857 Query 29762 TTAAGGTTTTAACAAATATCTGCATTTT 29789 |||| || |||||||| ||||||||||| Sbjct 648858 TTAAAGTCTTAACAAAGATCTGCATTTT 648885 Score = 152 bits (168), Expect = 4e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| |||||| || |||||||||||||| || ||||| | | || | ||| || Sbjct 664095 ACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTTCTTCCATCTTCA 664154 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| |||||| | ||||||| ||||||||| || ||||| || ||||| ||||| Sbjct 664155 AGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCTTCTTTATCTTG- 664213 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 ||| || | || ||| | |||| ||| || ||| ||| ||||||||||| || ||||| Sbjct 664214 AATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGAGTGATGGTTTT 664273 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| | ||||| ||||| || |||||| Sbjct 664274 TCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 138 bits (152), Expect = 9e-28 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || ||||| ||||| |||||||| | | || | | ||| || ||||| Sbjct 663644 ATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTG 663703 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 |||||||||| | ||||||| ||||||||| || ||||| || ||||| ||||| ||| | Sbjct 663704 TTTGCCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG-AATCT 663762 Query 29703 TTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAG 29761 | | ||| ||| | |||| || || ||| ||| ||||| | || || || ||||||| Sbjct 663763 TAGCTTTAACATTCTCTATTGTATCTGAAGCTTCAACTTCTAAGGTAATGGTCTTGCCAG 663822 Query 29762 TTAAGGTTTTAACAAATATCTGCAT 29786 | | ||||| ||||| || ||||| Sbjct 663823 TGAGAGTTTTGACAAAAATTTGCAT 663847 >seq2021 Length=1035722 Score = 134 bits (148), Expect = 1e-26 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||||||||| ||||| |||| | || || ||| || | ||| || |||||| | | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 | | | ||||||||| || || || || ||||| || || |||||| | ||| ||| || Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTG-AATTTTAGCTTTCACATTT 239321 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 |||| ||| || || ||||||||||||||| |||||||| || || || ||||| ||| Sbjct 239322 TCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACA 239381 Query 29776 AATATCTGCAT 29786 ||||||||||| Sbjct 239382 AATATCTGCAT 239392 >seq2420 Length=677074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||| ||||| |||||||| ||| ||| |||| | || || || ||| ||| Sbjct 459048 TACCTTCTTTATCTTG-AATTTTTGCTTTAACATTTTCAATGGTATCTGATGCTTCAACT 458990 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| |||||||||| || || |||||||||||||| Sbjct 458989 TCAAGAGTAATAGTCTTGCCAGTTAGAGTCTTCACAAATATCTGCAT 458943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| ||||| ||||||||||| | || ||||| || ||||| |||||||| | | Sbjct 459227 CCACCCCTTAAACGTAGCACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 459168 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| |||||| | || |||||||| ||| | || ||| Sbjct 459167 AGTGTCCTACCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGACCAGGTGGA 459108 Query 29680 ATACC 29684 || || Sbjct 459107 ATTCC 459103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207786797771