Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 seq435 105 8e-18 seq1236 100 4e-16 >seq3 Length=676877 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||| | |||||| |||| ||||| || || || |||| |||||| || | | |||| Sbjct 624803 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGCGAAAAGGATGTT 624744 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 | ||||| | | ||| |||| ||||| |||||||||| |||||||||| || || Sbjct 624743 CATATTTGGGATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGG 624684 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 168692 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 624683 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 624639 >seq435 Length=416815 Score = 105 bits (116), Expect = 8e-18 Identities = 189/270 (70%), Gaps = 7/270 (3%) Strand=Plus/Plus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGATA 192984 || ||| || || | ||| |||| |||||||||| ||||| | || || || |||| Sbjct 228486 AATGGATACTTTAGCACATGTATTATATTATCCACATAAACCTTTAGTAACTACTAGATC 228545 Query 192985 T-TGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || | | | || | |||| || ||| |||||| ||| ||||||||| Sbjct 228546 TATGGAATATCTTAGAT-TTCGTGAATTA-CCTGCTGGAATTAATAGTATAGTTGCTATA 228603 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || ||||||||||||||||||||||| ||| ||||||||||| | || ||||| Sbjct 228604 TTATGTTATACTGGTTATAATCAAGAAGATAGTGTTATTTTAAATGCTAGTGCTGTTGAA 228663 Query 193104 AGAGGATTATTTGGTACTATAACTTATAATACATATACAGTTGAAGAAACAAA---AAAT 193160 ||||| || ||| | || || ||||| | |||| || | |||| | || || | Sbjct 228664 AGAGGTTTCTTTCGATCTGTATTTTATAGATCTTATAAAGATTCAGAATCTAAGAGAATT 228723 Query 193161 GGAATTATAGAAGAAAAAATAGATATACCT 193190 ||| | ||||||| || | || | |||| Sbjct 228724 GGAGATCAAGAAGAACAATTTGAAAAACCT 228753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGG 193498 ||||| || |||| || ||||||||| |||| | |||| | ||||||| ||||| || Sbjct 229111 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGCGG 229169 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 || ||| |||||| |||||||||||| | | |||| | |||||||||||| Sbjct 229170 AATTCAATATAGACAAGAGGATATGCCATTTTCGTGTGAAGGTCTTACACCAGATATTAT 229229 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTG 193608 |||||||| || ||||||||| | ||||| ||| ||| | |||| Sbjct 229230 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 229279 >seq1236 Length=152982 Score = 100 bits (110), Expect = 4e-16 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 163001 AAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGACTATAAACACGGTGAACAA 163060 || ||||| ||||| ||| | ||| || ||||| ||| ||| | || || ||| Sbjct 61058 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 60999 Query 163061 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 163119 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 60998 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 60940 Query 163120 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 163177 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 60939 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 60880 Query 163178 GCATCAAGATATATTTATACCA 163199 | || ||||||||| ||||| Sbjct 60879 TCCTC--GATATATTTTTACCA 60860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158298540680