Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 >seq3 Length=676877 Score = 118 bits (130), Expect = 1e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 180428 GAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAATGATATTGGTGTT 180487 ||||| |||||| | || ||||| | |||||| | || |||| || | | |||| Sbjct 624803 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGCGAAAAGGATGTT 624744 Query 180488 AAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGATTTCATTTTCGA 180547 | | ||| ||| ||| |||||||| ||||||||||||||||||| ||| | | Sbjct 624743 CATATTTGGGATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGG 624684 Query 180548 AAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACAT 180592 ||||||| |||||||| || |||||||||||||||||||||||| Sbjct 624683 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 624639 Score = 104 bits (114), Expect = 3e-17 Identities = 168/236 (71%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 180637 AGGTATAGACCAATTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCC-GAA 180695 |||||| || ||||||| |||||||||| | ||| | || |||| |||| ||| Sbjct 624512 AGGTATTGATCAATTAAAAGAAGTTATAGATAAAATACGATATTCTCCC-AATGATAGAA 624454 Query 180696 GAATAATCATAGATAGT-TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGT 180754 |||| || || || || |||||| | | | ||| | |||||| | || || ||| Sbjct 624453 GAATTATAAT-GACAGCATGGAATCCAATTGATATTCCAAAAATGGCTTTACCTCCTTGT 624395 Query 180755 CACTGTTTGGTACAATTTTATGTTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAA 180814 || ||||| || ||||||||||| || ||| || | ||| |||||| | |||||| Sbjct 624394 CATTGTTTCGTTCAATTTTATGTAAGCAATGAA---GAATTATCATGCCAACTTTATCAA 624338 Query 180815 AGATCTGCAGATTTAGGATTAGGTGTACCATATAATATTGCTTTCTATTCATTTTT 180870 ||| ||| ||| | || | |||||||||| ||||||||| | ||||| || || Sbjct 624337 AGAAGTGCGGATATGGGTCTTGGTGTACCATTTAATATTGCATCTTATTCTTTGTT 624282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655260087679000