Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 seq1236 109 7e-19 seq435 95.1 2e-14 seq2337 82.4 1e-10 >seq3 Length=676877 Score = 136 bits (150), Expect = 5e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 171672 ||| | |||||| |||||||||| || || || |||| |||||| || | | |||| Sbjct 624803 GAATTGTTATGGTTTATTAAAGGATCCACAAATGCAAAGAAATTAAGCGAAAAGGATGTT 624744 Query 171673 AAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGA 171732 | ||||| ||| ||| |||| ||||| |||||||||| || || |||| || || Sbjct 624743 CATATTTGGGATGCGAATAGTTCGCGTGAGTTTTTAGATTCTTGTGGTTTTATAGATAGG 624684 Query 171733 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACAT 171777 ||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 624683 GAAGAAGGAGATTTAGGTCCTATTTATGGATTTCAATGGAGACAT 624639 >seq1236 Length=152982 Score = 109 bits (120), Expect = 7e-19 Identities = 148/202 (73%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 165163 AAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACAA 165222 |||||||| ||||| ||| | ||| || ||||| ||| ||| | ||||| ||| Sbjct 61058 AAAGTTGCACAATTGGCTGGTTCTGTAGCTGAACATTCAGCATATCACCATGGAGAAGTT 60999 Query 165223 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | |||||| || |||| ||||| |||| ||| |||| || || | ||||||||| Sbjct 60998 TCTCTTATGTCAA-CTATTATTAATCTTGCACAAAATTTCGTAGGAAGTAATAATATAAA 60940 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGC--G 165339 |||||| |||| ||||||||||||||| ||| | | |||||| |||||| | || | Sbjct 60939 CTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTGCAGGAGGAAAAGATGCAGCAAG 60880 Query 165340 GCATCAAGATATATTTATACCA 165361 | || ||||||||| ||||| Sbjct 60879 TCCTC--GATATATTTTTACCA 60860 >seq435 Length=416815 Score = 95.1 bits (104), Expect = 2e-14 Identities = 174/249 (70%), Gaps = 7/249 (3%) Strand=Plus/Plus Query 192500 ATTAAATTATCCACAAAAACCACTTGTTACCAC-AGATAT-TGCAAAATTTAATAAATTA 192557 |||| |||||||||| ||||| | || || || |||| | || || || | | | || Sbjct 228507 ATTATATTATCCACATAAACCTTTAGTAACTACTAGATCTATGGAATATCTTAGAT-TTC 228565 Query 192558 GACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAAC 192617 | |||| || ||| |||||| ||| ||||||||| || |||||||| ||||| Sbjct 228566 GTGAATTA-CCTGCTGGAATTAATAGTATAGTTGCTATATTATGTTATACTGGTTATAAT 228624 Query 192618 CAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGCACTATA 192677 |||||||| ||| ||||||||||| | || |||||||||| || ||| | || || Sbjct 228625 CAAGAAGATAGTGTTATTTTAAATGCTAGTGCTGTTGAAAGAGGTTTCTTTCGATCTGTA 228684 Query 192678 ACTTATAATACATATACAGTTGAAGAAACAAA---AAATGGAATTATAGAAGAAAAAATA 192734 ||||| | |||| || | |||| | || || |||| | ||||||| || | Sbjct 228685 TTTTATAGATCTTATAAAGATTCAGAATCTAAGAGAATTGGAGATCAAGAAGAACAATTT 228744 Query 192735 GATATACCT 192743 || | |||| Sbjct 228745 GAAAAACCT 228753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 192993 CGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGG 193051 ||||| || |||| || ||||||||| ||| | |||| | ||||||| ||||| || Sbjct 229111 CGTATTCCACAAATCGGTGATAAATTTGCTTCACGTCATGGAC-AAAAAGGTACTTGCGG 229169 Query 193052 TATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTAT 193111 || ||| |||||| |||||||||||| | | |||| | |||||||||||| Sbjct 229170 AATTCAATATAGACAAGAGGATATGCCATTTTCGTGTGAAGGTCTTACACCAGATATTAT 229229 Query 193112 TATTAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTG 193161 |||||||| || |||||| || | ||||| ||| ||| | |||| Sbjct 229230 AATTAATCCTCATGCTATTCCATCACGTATGACTATTGGTCACTTAATTG 229279 >seq2337 Length=7230 Score = 82.4 bits (90), Expect = 1e-10 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 50319 AGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAG 50378 |||||| ||| ||| | || ||| | ||||| ||| | |||||| |||| | Sbjct 5098 AGATGGCGATTTAGTAATTTTCAATCGACAACCGACATTACATAAAATGAGTATGATGGG 5157 Query 50379 TTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAAT-TTAGCTATGACTAAAG 50437 | || || ||| || |||| | |||||| |||||| |||| | | || | Sbjct 5158 TCATAGGGTAAAAGTTTTACCATGGAGTACATTTCGTATGAATCTTAGTTGT-ACATCAC 5216 Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 50497 |||||||||| ||||| ||||| ||||||||||||||||||| || |||||| |||||| Sbjct 5217 CATATAATGCCGATTTCGATGGTGATGAAATGAATTTACATGCCCCACAATCA-ATGGAG 5275 Query 50498 -CTACTGCTGAATTACAA 50514 || ||| ||| || || Sbjct 5276 ACTCGTGCAGAAGTAGAA 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628512100508160