Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1112 123 5e-23 seq2209 100 5e-16 seq546 95.1 2e-14 >seq1112 Length=5701942 Score = 123 bits (136), Expect = 5e-23 Identities = 279/415 (67%), Gaps = 11/415 (3%) Strand=Plus/Minus Query 142802 TAGAATAAAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCATCT 142861 || || ||| || ||||| ||| ||||| || || || || |||| ||||| || | Sbjct 3493426 TAAAAAAAAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATT 3493367 Query 142862 AATAAAAGAATTAACTCGTTTAGAAAATATAGAATTAAGAATAGTCGCTACAGAAAATGC 142921 | || | ||||| ||| | || | ||| | |||||||| | || ||||| || Sbjct 3493366 AGTAGATAAATTATGGCGTA---ATAACTTTGAAGTGAGAATAGTAGTCACTGAAAAAGC 3493310 Query 142922 TATGAAATTT---ACAGACCAAAAAA---CTTTAGGTATTCCTATTTATACAGATAAAGA 142975 || | | ||| | ||| | || || ||| |||| ||| | |||| || Sbjct 3493309 TAAGCATTTTTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGT 3493250 Query 142976 TGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAG-GAGAT 143034 || ||| || ||||| || | | | ||||| || |||||||| || |||| || || Sbjct 3493249 GGAATGGGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAAT 3493191 Query 143035 GGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACG 143094 |||| ||| | ||| | || || || ||| || ||||| | | |||||||| | | Sbjct 3493190 GGGCCGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGCAAAATAGCTAGTG 3493131 Query 143095 GTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTA 143154 ||||||| |||||| || |||| | | | | | | ||||||||| | || ||| | Sbjct 3493130 GTATATGTGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGG 3493071 Query 143155 TTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACA 143209 | |||||||| || ||||||| ||||||||||||||| |||| | || ||| Sbjct 3493070 TCTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACA 3493016 >seq2209 Length=4115427 Score = 100 bits (110), Expect = 5e-16 Identities = 103/137 (75%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| ||||| ||||||||||| || |||||||| | ||||||| Sbjct 648227 AGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCTAGTTGTTTA 648286 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| ||||| | ||| |||| |||||||||||||| ||| Sbjct 648287 CCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATCTTAGCT 648346 Query 81753 TTTATATTTTCAATCGT 81769 || | |||||| || || Sbjct 648347 TTAACATTTTCTATTGT 648363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| | || ||||| ||||||||||| || || ||||||| ||||| | Sbjct 663648 AGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTG 663707 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | || ||| ||| | ||| | ||| |||| |||||||||||||| ||| Sbjct 663708 CCAGCAAAGATCAATCGTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATCTTAGCT 663767 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| || || |||| Sbjct 663768 TTAACATTCTCTATTGTAT 663786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| ||||||| || ||||||||||| || || ||||||| ||||| | Sbjct 663876 AGTGTAGATTCCTTTTGGATATTATAATCTGAGAGTGTTCTACCATCTTCAAGTTGTTTG 663935 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || | || ||||||| |||| | ||| |||| |||||||||||||| || Sbjct 663936 CCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATTCCTTCTTTATCTTGAATCTTAGCC 663995 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| || || |||| Sbjct 663996 TTTACATTCTCTATAGTAT 664014 >seq546 Length=368327 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 |||||||||||||||||||||| || | || ||| | ||| ||||||| ||||| Sbjct 22750 TAGGTTGTATGTGGTCTATTTGTGGTGTCCATGATCATGGTTGGCCAGAAAGAGATATAT 22809 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACAT 183316 ||||||| || ||||||||||||||||| ||| ||| |||||| | ||||| || Sbjct 22810 TTGGAAAAATTAGATATATGAATTATGAAGGTTGTAAACGAAAATTTAACATTGCTGAAT 22869 Query 183317 TT 183318 || Sbjct 22870 TT 22871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903383747592160