Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2409 127 5e-24 seq2337 104 6e-17 seq69 96.9 8e-15 >seq2409 Length=688144 Score = 127 bits (140), Expect = 5e-24 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||| |||||| |||||| ||| || ||||| || | ||||||||||||||||| Sbjct 115298 TGACATTGTTGAAAGACATCTGAGAGATGATGATGTAGTGTTATTCAATAGGCAACCATC 115357 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG-ACATTTC 305411 | | |||||| | || ||||| ||||||| ||| ||||| | || | |||||| Sbjct 115358 ATTACATAAATTAAGCATCATGGCACATAAAGCAAAAATATTAGAT-CATAGAACATTTA 115416 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||| | ||| |||||| || |||||||| ||||| || || |||||||||||| Sbjct 115417 GATTTAATGAATGTGTTTGTACTCCATATAATGCTGATTTCGACGGCGATGAAATGAATT 115476 Query 305472 TGCATGTACCTCAA 305485 | || || |||||| Sbjct 115477 TACACGTCCCTCAA 115490 >seq2337 Length=7230 Score = 104 bits (114), Expect = 6e-17 Identities = 122/161 (76%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | ||||| || | ||||||||| |||||||| ||||| || ||||| ||| Sbjct 5117 TTCAATCGACAACCGACATTACATAAAATGAGTATGATGGGTCATAGGGTAAAAGTTTTA 5176 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTT 305451 | |||| | |||||||| | ||| | ||| ||||| || |||||||| ||||| Sbjct 5177 CCATGGAGT-ACATTTCGTATGAATCTTAGT---TGTACATCACCATATAATGCCGATTT 5232 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||| |||||||||||| | |||| || ||||||| || Sbjct 5233 CGATGGTGATGAAATGAATTTACATGCCCCACAATCAATGG 5273 Score = 98.7 bits (108), Expect = 2e-15 Identities = 180/255 (71%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | ||||||||| | ||||| || || |||| ||||| | | || Sbjct 4673 TTACAATTTCATGTAGCAACATTAGTTGATAACGATATGCCTGG---TATGCCGAGAGCT 4729 Query 304946 ---CAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAAGAGGG 305001 |||| ||| || | |||| |||| | ||| | |||| | | ||||| ||||| || Sbjct 4730 ATGCAAAAATCAGGTAAACCTCTAAAAGCTATAAAAGCAA-GATTAAAAGGAAAAGAAGG 4788 Query 305002 TCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCAC 305061 | || ||||| ||| | ||||| ||||||||||||||| ||| | | ||| || || Sbjct 4789 CAGAATACGAGGAAATTTGATGGGTAAACGTGTTGATTTTTCTGCTCGTACTGTTATTAC 4848 Query 305062 ACCTGATTCTCAAATTA-GTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAA 305118 |||||| || || ||| | || || || | || || || | ||| |||||| || Sbjct 4849 TCCTGATCCT-AATTTACGGATTGATCAAGTGGGCGTACC--TAGAAGCATTGCTCAGAA 4905 Query 305119 ACTAACATTTCCAGA 305133 |||||||||| || Sbjct 4906 TTTAACATTTCCTGA 4920 >seq69 Length=621926 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111054 TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 || ||||||||||| |||||||| ||||| | |||||||||||| ||||||||||| Sbjct 548473 TCTCAAGTTGAAACAGGAACTCCATATATGCTTTATAAAGATCATTGCAATCGCAAATCA 548532 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| ||| |||||||||| ||| ||||||||| || Sbjct 548533 AATCATCAAAATATAGGAACAATAAAGAGTAGTAATTTATG 548573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186775834119191