Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1766 125 5e-24 seq2209 107 1e-18 >seq1766 Length=1490156 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||| | || ||||||| || ||||||||| || || ||||| || Sbjct 1263040 CCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGAT 1262981 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| ||| | || || | |||||| || ||||| ||||| | ||||||||| | || Sbjct 1262980 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGA 1262921 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||||| ||| | ||| ||| ||| || | || || Sbjct 1262920 ATTCCTTCCTTGTCTTGAATTTTCGCTTTTA-CATTTTCAATGGTATCTGAGGCCTCAAC 1262862 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||||||||| || ||||| |||||||||||||| Sbjct 1262861 CTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCAT 1262814 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| | || | || ||||| |||||||| || ||||||||||| Sbjct 1264409 ACCACCTCGGAGACGAAGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGA 1264350 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| ||| | || |||||||||||||| ||||| ||||| | ||| ||||| | || Sbjct 1264349 AAGTGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGG 1264290 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || || |||| || | ||| || | ||| | Sbjct 1264289 AATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATTTTCAATGGTATCAGAAGCTTCAA 1264231 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || | ||||| || || || |||||| Sbjct 1264230 CTTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTAACGAAAATTTGCATA 1264181 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| || || |||||||| || ||||||||| || || ||||| || Sbjct 1263952 CCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAA 1263893 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || | || |||| ||||| || ||||||||||| | ||||||||| | || Sbjct 1263892 AGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGA 1263833 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || ||||| |||| ||||| || | || || || ||| || Sbjct 1263832 ATACCCTCCTTATCTTGGATTTT-AGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263774 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || || || || || ||||| Sbjct 1263773 CTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| || || |||||||| || |||||||| || || |||||||| Sbjct 1263724 CCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAA 1263665 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| || ||||||||||| | ||||||||| | || Sbjct 1263664 AGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGA 1263605 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || ||||| |||| ||||| || | || || || ||| || Sbjct 1263604 ATACCCTCCTTATCTTGGATTTT-AGTTTTAACATTTTCAATAGTATCAGATGCTTCAAC 1263546 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || | || || || || || |||||| Sbjct 1263545 CTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCATA 1263497 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| || | ||| || || |||||||| || ||||||||||| Sbjct 1263269 ACCACCACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGA 1263210 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||| ||||| |||||||| ||||| | ||| ||||| | || Sbjct 1263209 AAGAGTACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGG 1263150 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | || ||||| || | ||| || | ||| | Sbjct 1263149 AATACCTTCTTTATCCTGAATTTT-AGCTTTAACATTTTCAATGGTATCTGAAGCTTCAA 1263091 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 1263090 CTTCTAAAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||||| || | ||| || || |||||||| || ||||||||||| Sbjct 1263497 ACCACCTCGAAGACGTAGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGA 1263438 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||| |||||||| |||| | ||| ||||| | || Sbjct 1263437 AAGAGTACGACCATCTTCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGG 1263378 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| |||||| || || |||| || | ||| || | ||| | Sbjct 1263377 AATACCTTCTTTGTCTTGAATTTT-TGCTTTTACATTTTCAATGGTATCAGAAGCTTCAA 1263319 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || | ||||| || || || |||||| Sbjct 1263318 CTTCAAGAGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAAATTTGCATA 1263269 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| || || || | || || ||||||||||| ||||| Sbjct 1264144 TCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 1264085 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| || || | || | |||||||||||| |||||| |||| |||| Sbjct 1264084 ATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTC-ACATT 1264026 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || ||| | ||| || || | || || || || ||||| | ||||| || Sbjct 1264025 TTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATAGTCTTTCCTGTAAGAGTTTTGAC 1263966 Query 33738 AAAGATCTGCAT 33749 || || ||||| Sbjct 1263965 GAAAATTTGCAT 1263954 >seq2209 Length=4115427 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||| ||||| |||||| || || || ||||| |||||||| | | || Sbjct 648671 AATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGTTCTACCATCT 648730 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||| || |||||||||||||| || |||||| | || | || ||||| || Sbjct 648731 TCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATCT 648790 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||| || | || |||| || | ||||| | ||| || || | ||||| || Sbjct 648791 TGAATCTT-AGCTTTTACATTCTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTGATGGT 648849 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||||||| || || |||||||||||||| Sbjct 648850 TTTTCCTGTTAAAGTCTTAACAAAGATCTGCAT 648882 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | | ||||| ||||| || || || ||||| || || ||||| || Sbjct 663848 ACCTCCTCTAAGTCTCAACACTAAATGGAGTGTAGATTCCTTTTGGATATTATAATCTGA 663907 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||| | | || || | |||||| || ||||||||||| || || |||||| | || Sbjct 663908 GAGTGTTCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAATCGTTGTTGATCTGGTGG 663967 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || ||| || | | |||| || | || || | ||| | Sbjct 663968 AATTCCTTCTTTATCTTGAATCTT-AGCCTTTACATTCTCTATAGTATCTGAAGCTTCAA 664026 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 664027 CTTCAAGAGTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 664075 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | | || || ||||| || || || ||||| || || ||||| || Sbjct 648427 ACCTCCTCTAAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGA 648486 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | ||||| || |||||||||||||| ||||| || | || Sbjct 648487 GAGAGTTCTTCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGG 648546 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | | |||| || | ||||| | ||| | Sbjct 648547 AATTCCTTCTTTGTCCTGAATCTT-AGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAA 648605 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 648606 CTTCAAGTGTGATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCAT 648654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694261219520