Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2209 143 6e-29 seq1766 141 2e-28 seq2021 84.2 5e-11 >seq2209 Length=4115427 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| |||||||| |||||| | ||||| ||| ||| || Sbjct 664300 CAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 664241 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| |||||||||||| || || ||| Sbjct 664240 ACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCCGATCAGCAA 664181 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || ||||| || | ||||||||||| || | | |||||||| | Sbjct 664180 CGATTGATCTTTGCTGGAAAACAACTTGAAGATGGAAGAACACTCTCAGATTACAATATT 664121 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||||||||| || || |||||||||||| Sbjct 664120 CAAAAAGAATCTACTCTTCATCTGGTATTGAGACTTCGA 664082 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| || || || || || || ||||| ||| ||| ||| Sbjct 648423 CAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAGAC 648364 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 648363 ACAATAGAAAATGTTAAAGCTAA-GATTCAAGATAAAGAAGGAATTCCTCCAGATCAACA 648305 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || | ||||||||||| ||| | | ||||| || | Sbjct 648304 ACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAATAT 648245 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| ||||| |||||| | || |||||||||||| Sbjct 648244 TCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGA 648205 Score = 125 bits (138), Expect = 2e-23 Identities = 159/215 (74%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| || || || || || || ||||| ||| ||| || ||| | Sbjct 663839 TTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCAGATACAAT 663780 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 || || ||||| || ||||||||| |||||||||||| || || ||| || Sbjct 663779 AGAGAATGTTAAAGCTAA-GATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAACGAT 663721 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| || || || || | |||||||| || || | | ||||| || | |||| Sbjct 663720 TGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATATTCAGA 663661 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||||||| || || |||||||||||| Sbjct 663660 AAGAGTCTACTCTTCATCTAGTATTGAGACTTCGA 663626 Score = 122 bits (134), Expect = 2e-22 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | ||||||||||| ||||| || ||||| ||| Sbjct 648885 AAAATG---CAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAA 648829 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| |||||| | || ||||| ||||||||||| ||||| |||||| || Sbjct 648828 GCTTCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCA 648769 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | || || || || || || | |||||||| || || | | ||| Sbjct 648768 GATCAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGAT 648709 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || | |||||||||||||||||||| || || |||||||||||| Sbjct 648708 TATAATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGA 648661 Score = 122 bits (134), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| || || ||||| || || || | ||||| ||| ||| || ||| | Sbjct 663611 TTTTGTCAAAACTCTTACTGGAAAGACTATTACACTTGAAGTTGAAGCTTCGGATACAAT 663552 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| |||||| ||||||||||| |||||||||||| || || ||| || | Sbjct 663551 AGAAAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAGCAACGATT 663492 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || ||||| || | |||||||||||||| | |||||||| | ||||| Sbjct 663491 GATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTCTTAGATTACAATATTCAGAA 663432 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| ||||| | ||| | || |||||||||||| Sbjct 663431 AGAATCTACATTGCACTTGGTATTGAGACTTCGA 663398 Score = 113 bits (124), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| || || || ||||| ||||| | ||||| ||| ||| |||||| | Sbjct 648646 TTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTCAGACACAAT 648587 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| |||||| |||||||| || |||||||||||| || ||| ||| | | Sbjct 648586 AGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCAGCAACGTTT 648527 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || || ||| | ||||||||||| ||| | | ||||| || | || || Sbjct 648526 GATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAATATTCAAAA 648467 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || || | || ||||||||| || Sbjct 648466 GGAATCTACACTCCATTTAGTATTGAGACTTAGA 648433 Score = 107 bits (118), Expect = 5e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| |||||||| |||||| | ||||| ||| ||| || Sbjct 664072 CAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTCAGAT 664013 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| |||||||||||| || || ||| Sbjct 664012 ACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCAACAA 663953 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || || | |||||||| || || | | ||||| || || Sbjct 663952 CGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAATATC 663893 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || ||||| || || | || ||||||||| || Sbjct 663892 CAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGA 663854 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || | |||||| ||||| |||||||| | |||||| || | | ||| Sbjct 648205 TCGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGT 648264 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || || || || ||||| | ||||||||| Sbjct 648265 TCTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGA 648310 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || |||||||||||||||||||| | |||||| || | | || Sbjct 648661 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 648720 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| || || || || || || || | ||||||||| Sbjct 648721 TCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGTTGTTGA 648766 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || |||||||||||||||||||| | |||||| || | | || Sbjct 663626 TCGAAGTCTCAATACTAGATGAAGAGTAGACTCTTTCTGAATATTATAATCTGAGAGTGT 663685 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| || || || || || ||||| | ||||| ||| Sbjct 663686 TCTACCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGTTGCTGA 663731 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || ||||||||||| ||||| || | ||| || || | | || Sbjct 664082 TCGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGT 664141 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| || || ||||| || ||||| | ||||| ||| Sbjct 664142 TCTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGA 664187 >seq1766 Length=1490156 Score = 141 bits (156), Expect = 2e-28 Identities = 162/214 (76%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| |||||||| || ||||| ||||| ||| ||| || || | Sbjct 1263050 TTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCAGATACCAT 1263109 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| ||||| || |||||||| ||| || || || ||| Sbjct 1263110 TGAAAATGTTAAAGCTAAA-ATTCAGGATAAAGAAGGTATTCCTCCTGATCAACAGAGAT 1263168 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| ||||| || |||||||||||||| | ||| | |||||||||| | || | Sbjct 1263169 TGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAATATTCAAA 1263228 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||||| ||||| |||||||| ||||||| Sbjct 1263229 AAGAATCTACACTTCATCTTGTTTTACGACTTCG 1263262 Score = 129 bits (142), Expect = 1e-24 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||| | ||||| ||| |||||| || | ||| Sbjct 1264197 AAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGATACCATTGAAAAT 1264256 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| |||||||| |||||||| ||| || || || ||| | ||||| Sbjct 1264257 GTAAAAGCAAAA-ATTCAAGACAAAGAAGGTATTCCTCCTGATCAACAGAGATTGATCTT 1264315 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || |||||||||||| | || | |||||||||| | || ||||| || Sbjct 1264316 TGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACAATATTCAAAAAGAATC 1264375 Query 206364 TACTCTTCACCTTGT 206378 |||||||||||||| Sbjct 1264376 GACTCTTCACCTTGT 1264390 >seq2021 Length=1035722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || || ||||| |||||| | ||||| ||| || || Sbjct 239389 CAGATATTTGTGAAAACTTTGACGGGTAAAACTATCACTCTTGAAGTAGAAGCATCAGAT 239330 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| ||||| || ||||||||||| || || || Sbjct 239329 ACTATAGAAAATGTGAAAGCTAAA-ATTCAGGATAAAGAAGGAATACCACCTGATCAGCA 239271 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || |||||||| || ||||||||| | ||||| | || || || | Sbjct 239270 ACGTCTTATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACTTTATCGGACTATAATAT 239211 Query 206352 CCAGAAAG 206359 || |||| Sbjct 239210 TCAAAAAG 239203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181783989605951