Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1766 122 8e-23 seq2021 95.1 1e-14 seq2209 84.2 2e-11 seq69 82.4 7e-11 >seq1766 Length=1490156 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | |||| ||||||||||| ||||| ||| | ||||| |||||| Sbjct 1263479 AACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTC 1263420 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||||| | |||| || | ||||||||| || || || |||||||| || Sbjct 1263419 TAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCTTCTTTGTCTTG 1263360 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| ||| | | ||| | ||||| | | || ||||| | || | ||||| Sbjct 1263359 AATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 1263300 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| | |||||| ||||| Sbjct 1263299 TCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| | ||| | | |||| ||||||||||| ||||| ||| | ||||| | Sbjct 1264168 CGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCA 1264109 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | | |||||| || ||||| || |||||||| Sbjct 1264108 TCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTG 1264049 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | |||||||| | || ||||| | || | Sbjct 1264048 TCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAAAGTAATA 1263989 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | |||||| ||||| Sbjct 1263988 GTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCAT 1263954 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| | ||| | | || ||||||||||| ||||| ||| | ||||| | Sbjct 1263256 CGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCA 1263197 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||||| | |||| | | ||||||||| ||||| || ||||||||| Sbjct 1263196 TCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTA 1263137 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | | || ||||| | || | Sbjct 1263136 TCCTGAATTTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATA 1263077 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||||| ||||| Sbjct 1263076 GTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCAT 1263042 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || ||||||| |||| ||||||||||| || || ||| | ||||| Sbjct 1263716 CAAACGCAATACTAAATGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACG 1263657 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||| | | | || | | || ||||||||||| || || || Sbjct 1263656 ACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTC 1263597 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||||| | |||| |||| ||| | ||| | |||||| | | || || || | | Sbjct 1263596 CTTATC-TTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATG 1263538 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||||| || || ||||| || | |||||| ||||| Sbjct 1263537 TAATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263498 Score = 100 bits (110), Expect = 3e-16 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACG 131964 || |||| || ||||||| |||||||||||||||| || || || | | || ||||| Sbjct 1263031 AAACGCAGTACTAAATGTAATGTTGACTCTTTTTGAATATTATAATCAGATAAT-GTACG 1262973 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| || |||||||| | | |||| | | || |||||||| || || ||||| Sbjct 1262972 TCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTC 1262913 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || |||||| ||| | | ||| | ||||| | | ||| || || | || Sbjct 1262912 CTTGTCTTGAATTTTCGCTTTTACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGT 1262853 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTAT 132130 | |||||||| |||| ||||| | || |||||||||| |||| Sbjct 1262852 TATTGTTTTACCTGTCAATGTTTTGACAAAGATCTGCATGA-TTAT 1262808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| ||||| ||| | ||||| |||||| | ||||| || | | Sbjct 1264375 GATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCTTCCAATTGTTTTCCAGCA 1264316 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||||||||| ||||| || |||||||| || ||||||| ||| | Sbjct 1264315 AAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATTTTTGCTTTTACA 1264256 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | || ||||| | || | ||||| || || |||||||| Sbjct 1264255 TTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCGGTAAGAGTTTTA 1264196 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 1264195 ACGAAAATTTGCAT 1264182 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || ||||||| | |||||||||||||| || || || | ||||| Sbjct 1263944 CAAACGCAATACTAAATGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACG 1263885 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||||||||| | | | || | | || |||||||| || || || || Sbjct 1263884 ACCATCTTCCAGCTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTC 1263825 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||||| | |||| |||| ||| | ||| | |||||| | | || || || | | Sbjct 1263824 CTTATC-TTGGATTTTAGTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAG 1263766 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||||| || || ||||| || | |||||| ||||| Sbjct 1263765 TGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTTGCAT 1263726 >seq2021 Length=1035722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || ||||| | ||||| |||||| | || || || | | | | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | ||||| || ||||| || ||||| ||||||||||| |||||| ||||| | || Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAATTTTAGCTTTCACATTTT 239322 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | || ||||| | || | |||||||| |||| |||||| | | Sbjct 239323 CTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAA 239382 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 239383 ATATCTGCAT 239392 >seq2209 Length=4115427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | |||||| ||| |||||||||||||| || |||||||| Sbjct 648271 ATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCTTT 648330 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| || ||| | | ||| | || || | | || ||||| | || | Sbjct 648331 ATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAAGGTAAT 648390 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||||||| | || || ||||| Sbjct 648391 GGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 >seq69 Length=621926 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 146891 GATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAG 146950 |||| || ||||||||||| || | ||| || | ||| || | |||||| ||| | | Sbjct 549370 GATTTACAACTTGAAACTCTCCTGACAGTACTCTTCTTGTGTAGATATTGCTGGTGTATG 549311 Query 146951 GCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 | || | ||| |||||||| ||||| ||||| ||||| | ||| || ||||| || | Sbjct 549310 GTTCTATAGATTCATTATTTCCTAAAATTTGTGCCGTTGATGCTGTTGGCATAGGTGCAA 549251 Query 147011 CCAACAATGAATTTC 147025 ||||| ||||||| Sbjct 549250 TTAACAAAGAATTTC 549236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596716977160