Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2209 109 4e-19 seq1766 107 2e-18 >seq2209 Length=4115427 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| | |||||||||||||||||| | ||| ||| | Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | || ||| || ||| || |||||||| | || |||||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAG 663728 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||||||| | |||||| || ||| | ||||| || Sbjct 663727 CAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAAT 663668 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || ||||| ||||| || ||| |||||||||| | ||||||||| Sbjct 663667 ATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGA 663620 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | ||||| || ||||| || | ||| ||| | Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | | || || || ||| || |||||||| | || ||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | |||| ||| ||||||||| | |||||| || ||| | ||||| || Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||||||||| |||||||| ||||| | ||||||| Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| | ||||| || || || || | ||| ||| | Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | | | | || || || ||| ||||||||||| | || ||| || Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCA 648536 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| ||| || ||||| |||||||| | |||| | ||||| || Sbjct 648535 GCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAA 648476 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||||||||| |||||||||||||| | ||||||| Sbjct 648475 TATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 >seq1766 Length=1490156 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || ||||| | || || ||||| ||||| | ||| ||| | Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| || ||| | |||||| |||||| ||||||||||| | || ||| || Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1264072 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || ||||||||||||||| | ||| | ||||||||| Sbjct 1264073 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAA 1264132 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||||||||| || || ||| | || ||| Sbjct 1264133 TATTCAAAAAGAATCAACCCTCCATCTTGTTTTG 1264166 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| |||||| | ||||| || || ||||| | ||| ||| | Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 1263101 AGATACCATTGAAAATGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGATCA 1263160 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || ||||| || |||||| ||| | ||||||||| Sbjct 1263161 ACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTACAA 1263220 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||||||||||||||| ||| | || || Sbjct 1263221 TATTCAAAAAGAATCTACACTTCATCTTGTTTT 1263253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| ||||| || | || || || |||||||| |||| ||| | Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT 1263557 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||| || || || || | || ||||| Sbjct 1263558 GATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1263617 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||| | |||||| | ||| | |||||| || Sbjct 1263618 CAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAAT 1263677 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| |||||||||||||||||| | || |||| ||| Sbjct 1263678 ATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 1263725 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| | || || || || ||||| | ||| ||| | Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||||| ||||||||||| | || ||||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || || || | ||| || ||||| |||||||| | ||| | ||||||||| Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || ||||||||||| || || ||| Sbjct 1263450 ATTCAAAAAGAATCAACCCTCCAT 1263473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| ||||| || | || || || ||||| || |||| ||| | Sbjct 1263725 AATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATC 1263784 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | || ||| ||||| || || || || | ||| ||||| Sbjct 1263785 TGATACTATTGAAAATGTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCCCCAGATCA 1263844 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 ||||| | |||| ||| || ||||| | |||||| || | ||| | || |||| Sbjct 1263845 GCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCGG--ATTAT 1263902 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || |||||||| || |||||||||||||||||| | || |||| ||| Sbjct 1263903 AATATTCAAAAAGAGTCGACACTACATTTAGTATTGCGTTTGAGAGGTGGA 1263953 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||||||||| || || || || || |||| || || Sbjct 1262814 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 1262873 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||| ||||| | || ||||| Sbjct 1262874 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 1262933 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTACA 106437 ||||| | || | ||| || |||||| |||||||| | | | ||| | |||| | Sbjct 1262934 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTG--ATTATA 1262991 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 | || |||||||| || ||| ||||||||||| || | ||| |||| ||| Sbjct 1262992 ATATTCAAAAAGAGTCAACATTACATTTAGTACTGCGTTTAAGAGGTGGA 1263041 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| |||||||| | || || || || ||||| | ||| ||| | Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||||| ||||||||||| | || ||||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || || | || | ||| || |||||||| |||||| | | ||| | |||||||| Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CCGATTACA 1264359 Query 106438 ACATACAAAAAGAATCTACACTACA 106462 | || ||||||||||| || || || Sbjct 1264360 ATATTCAAAAAGAATCGACTCTTCA 1264384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402317679854048