Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2209 104 2e-17 seq2021 82.4 7e-11 >seq2209 Length=4115427 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 ||||| || ||||| | ||| ||||||||||| || ||||| | | |||| | Sbjct 648440 CTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCTTCCA 648499 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || ||||| ||||| ||||| ||||| || |||||||| | ||||| | || ||| Sbjct 648500 TCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTCTTTG 648559 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||| ||| | | || | | ||||| | ||| || || | ||||| Sbjct 648560 TCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGTGATA 648619 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || || | |||||| ||||| || ||||||| Sbjct 648620 GTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATTC 648656 >seq2021 Length=1035722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||| || || || | || || || | || || | ||||| || ||||| || Sbjct 239205 TTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAATA 239264 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGC 35667 | || ||||| || | || | | || || ||| ||| ||| |||| || | || | Sbjct 239265 AGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCC-TGAATTTTAGCTTTCACATTTTC 239323 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || | ||| || || | ||||| |||||||||||||||||||||||||| Sbjct 239324 TATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTTCACAAA 239383 Query 35728 TATCTGCAT 35736 ||||||||| Sbjct 239384 TATCTGCAT 239392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779901509480