Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq69 192 8e-44 seq613 158 2e-33 >seq69 Length=621926 Score = 192 bits (212), Expect = 8e-44 Identities = 230/310 (74%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 68622 TTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCT 68681 ||| || || ||| || | ||||||| ||| || || || |||| ||| | | | | Sbjct 549456 TTGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTT 549397 Query 68682 CTCCGTTAAAACTC-TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTC 68740 || |||||| ||| ||| || || ||||| || | |||||| || || || | |||| Sbjct 549396 TTCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTC 549338 Query 68741 TACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAG 68800 | | ||||| ||||| ||||| |||||||| | ||||||||||||||| | |||||| | Sbjct 549337 TTCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTG 549278 Query 68801 CAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGA 68860 | |||||||| |||||||||||||| | || ||| |||||||| |||||| | | Sbjct 549277 CCGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAA 549218 Query 68861 TTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGT 68920 |||| | ||| | | |||||||||| | || || ||| | ||||||||| | ||||| Sbjct 549217 TTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGT 549158 Query 68921 ATTGTAGAAT 68930 |||||| ||| Sbjct 549157 ATTGTAAAAT 549148 Score = 181 bits (200), Expect = 1e-40 Identities = 229/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || || ||||||||||||||||| | ||| || | |||||| | |||||||||||||| | Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| |||| |||||||||||| ||||| | |||| || || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || || ||||| | ||| ||||| | |||||||||| |||| ||| |||| || Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 547315 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | |||||||| |||||| | | | || || || || || || ||| || Sbjct 547314 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATA 547255 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAG 69959 || ||||| | ||| ||||||||||| || || || || ||||| || ||| |||||| Sbjct 547254 AGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 547195 Query 69960 AAGAAAACAGCT 69971 || ||||||||| Sbjct 547194 AA-AAAACAGCT 547184 Score = 150 bits (166), Expect = 2e-31 Identities = 135/167 (81%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| || ||| ||||||| |||||||||||| |||| |||||| |||||| || Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 ||||||| || | ||| | ||||| |||| ||||||||||||||| ||||| || |||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||||| ||| || | ||||| | |||||||||||| || ||||| Sbjct 547999 ATAGAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 123 bits (136), Expect = 3e-23 Identities = 233/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||||||||| |||||| || ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||||||| | ||||| | || | ||| || | | ||||| ||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 548678 Query 69236 AATCAAATCGTCCATCTA------TAACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||||||| | || | | ||||||||||| | || | || |||| ||||| Sbjct 548677 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 548618 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || || |||| | | | | ||| || | | |||||||||| |||||||| | Sbjct 548617 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 548558 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | || || || | |||||| ||||| || || || || || ||||| ||| Sbjct 548557 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGATCTTTATAAAGCATAT 548498 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 | ||||| || ||||||| ||||| | ||||| | |||| Sbjct 548497 ATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 548455 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| | || ||| |||||||| || || ||||| ||||| || Sbjct 549038 ATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCACCATA 548979 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | |||||| || || | |||| || | |||||||||| ||| || |||||||| Sbjct 548978 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 548919 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | | || |||||||||||| | || |||| |||||||| Sbjct 548918 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 Score = 109 bits (120), Expect = 8e-19 Identities = 199/288 (69%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 69948 TATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAA 70007 ||| || |||| || | || ||||||||||| || || |||| | ||| ||| | Sbjct 547136 TATAATTTTAAAAAATATAC--CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAG 547079 Query 70008 TGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGA 70067 ||| |||||||| || || || | ||| || | | ||| || ||||| |||||| Sbjct 547078 TGTTGGAGATGCATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTT 547019 Query 70068 TTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTT 70126 || ||||| ||| ||| || | | || || | ||| ||||||||||| |||| || Sbjct 547018 GTCAATATCTTCACC-ATGGATAGCAACTGCAACTCTCATTAACATATGCTGTGGTCTTT 546960 Query 70127 CTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAAT 70186 | || ||| || |||||| || | || | |||| || ||||| || ||||||| Sbjct 546959 CAACTACTTTTCCATGTATTTTTAATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAAT 546900 Query 70187 AGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 | || || ||| ||||| || ||||| || ||||||||| |||| Sbjct 546899 AATTATAACTAAAATCTCTATCATAAATTATTGCAGAATTTAACTTAT 546852 >seq613 Length=358256 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| || ||||||||| ||||||| | ||||||||||||||| | ||||| || || Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 | ||||| || |||||||| | ||| || || |||||||| ||| || ||||| ||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | ||| ||||| || ||||||||| ||| ||||||||||| || ||||| || Sbjct 260125 AACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATAT 260184 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA 40093 ||||| ||||||| | || || |||||||| ||| Sbjct 260185 AAAATGTTTTTCACTGTCAGTTAAATTATTCCAATCA 260221 Score = 109 bits (120), Expect = 8e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||||| | ||||||||| || |||||||||||||||||||| || ||| ||| Sbjct 259380 TTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATA 259439 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || ||| ||||| ||||| | || ||| |||| || || |||| ||| |||| ||| Sbjct 259440 AGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCA 259499 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || || | || || ||||| ||| ||| | ||| || | | Sbjct 259500 ATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACAATG 259559 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || || || |||||||||| |||| Sbjct 259560 TGTTTGAACATTAAACATGCAAAATCACAATGTAATCCCT 259599 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || || ||||| ||||| ||||| ||||| | ||||| Sbjct 259695 CCTCATCTCTAGAAATAAGCTCATTGCTGAATGTAAGTCCTGGCATAAGACCTCTCTTTT 259754 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || || || ||| ||| |||||| || ||||||||||| ||||| | Sbjct 259755 TTAACCAGAAAATAGCGGCGAAACTACCACTAAAGAAAATACCTTCTACTGCAGCAAAAG 259814 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||| | | || || | | | |||| | |||||| || ||||||| || Sbjct 259815 CAACTACACGTTCAGGAAAAGTAGCACTTTCATGGTTTATCCAATTTAACGCCCAATGAG 259874 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||| || ||||| |||| |||| ||||| ||||| Sbjct 259875 CTTTTTTTGCAACACATGGCAAATTTTCGATAGCGTTAAA 259914 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATC--TTCT-TGTGACATAACTCCCATTTT 39327 |||||| ||| ||| | || ||||| | || |||| | | ||| |||||| ||| Sbjct 259157 TTAAAATTCAGCATTAACAGTAAAATTGCTTTCAATTCTATCTTGCATTACTCCCCATTT 259216 Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| ||||| || || ||| || || || || ||||| ||||| || || |||| ||| Sbjct 259217 TTGATATTCTCCCACTTTTTTTTCAAAGAAGTTTGTTTTACCTTCTAAAGAAATATGTTC 259276 Query 39388 CATGAAATCAAACGGATT 39405 |||||||||||||||||| Sbjct 259277 CATGAAATCAAACGGATT 259294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686887926558840