Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2087 159 3e-34 seq613 138 9e-28 seq3 136 3e-27 >seq2087 Length=947496 Score = 159 bits (176), Expect = 3e-34 Identities = 225/315 (71%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| || | || | ||| |||||| |||||| |||||| ||| ||| || Sbjct 545184 CCAGATTGGGATTTTCAAAAAATGGGAATTGGTGGATTGGATAAAGAATTTACTGCTATT 545243 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 || || || || |||| || || |||||| | |||| | ||| ||||||||| ||| Sbjct 545244 TTCCGAAGGGCCTTTGCATCACGAGTTTTTCCACCAGAGATTGTTACACAATTGGGTTGT 545303 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||| |||| |||||||| ||||| || |||||||||||||| || Sbjct 545304 AAACATGTGAAAGGAATTTTACTTTATGGTCCACCAGGAACAGGAAAAACATTAATGGCT 545363 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 ||| || | | || ||| | | | | ||||| ||||| || ||||| ||| || Sbjct 545364 AGACAAATAGGAACTATGTTAAATGCTAGAGAACCT---AAAATCGTTAATGGCCCTCAA 545420 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 ||||| |||||||||| || || |||| ||| | || | || |||||||| ||| Sbjct 545421 ATCTTGGATAAATATGTCGGAGAAAGTGAAGCCAATATTAGAAGATTATTTGCTGATGCT 545480 Query 19513 GAAGAAGAACAAAAA 19527 ||||| ||| | ||| Sbjct 545481 GAAGAGGAAGAGAAA 545495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| ||||| |||||||| |||||| | || ||||| | || ||||| | ||| | Sbjct 545659 GGAGTTCATGATACTGTTGTGAATCAATTACTTGCAAAAATTGATGGTGTAGAACAATTA 545718 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||||||| | |||||||| ||||||||| || || | ||||| || |||||| Sbjct 545719 AATAATATTCTTGTTATTGGTATGACTAATCGAAGAGATATGATAGATGAAGCTTTATTA 545778 Query 19732 CGACCCGGTCGGTTGGA 19748 ||||| ||| | || || Sbjct 545779 CGACCTGGTAGATTAGA 545795 >seq613 Length=358256 Score = 138 bits (152), Expect = 9e-28 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||||||||||||||||| || || || |||||||| || || || || |||||| Sbjct 260196 GAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATCGTCAAT 260137 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | ||| || ||| |||||||| ||| || |||| ||||| ||||||||| Sbjct 260136 GAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTTTAT 260077 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || |||||| ||||||| |||||| ||||||| |||||||| Sbjct 260076 GGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTA 260036 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||| ||||| || ||||| ||||||| | ||| || ||||||||||| Sbjct 260417 AGAAAATCCACGTAGATTTGTTGTTTTTCCTATTCAATGGCCTGATATTTGGCAAATGTA 260358 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 |||||||| | || || |||||||||| |||||||| ||| | |||||| Sbjct 260357 TAAAAAAGCTGAAGCATCTTTTTGGACAGTGGAAGAAGTGGATCTTTCTAAAG 260305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||||||||| |||||| ||||||| || ||||| ||||||||||| ||||||| Sbjct 259296 AAAATCCGTTTGATTTCATGGAACATATTTCTTTAGAAGGTAAAACAAACTTCTTTGAAA 259237 Query 44553 AACGCGTTGGAGAATATCA 44571 || || ||||||||||| Sbjct 259236 AAAAAGTGGGAGAATATCA 259218 >seq3 Length=676877 Score = 136 bits (150), Expect = 3e-27 Identities = 185/254 (73%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || ||||||||||| | ||||||||||| | | || ||| |||||||| Sbjct 624851 TTTCCATTATTAACTACAAAACGTGTATTTTGGAAAGGTGTAGTGGAGGAATTGTTATGG 624792 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGA-GTGCACATTTGGAA 40810 ||||| ||||| | || ||||| ||||||||| |||| |||| || || |||||| | Sbjct 624791 TTTATTAAAGGATCCACAAATGCAAAGAAATTAAGCGAAA-AGGATGTTCATATTTGGGA 624733 Query 40811 TGCGCACAGTTCTAAAACATATTT---GTCTAGCATAGGATTACAAGATAGGGATGAAGG 40867 |||| | ||||| | ||| ||| | || || ||||||||| ||||| Sbjct 624732 TGCGAATAGTTCGCGTGAGTTTTTAGATTCTTG---TGGTTTTATAGATAGGGAAGAAGG 624676 Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTAT 40927 ||| | |||||| ||||||||||||| | | |||||||||| |||| |||| | ||| Sbjct 624675 AGATTTAGGTCCTATTTATGGATTTCAATGGAGACATTTTGGTGCAACATATAAAGATAT 624616 Query 40928 GTACTCTGATTATA 40941 |||| ||||||| Sbjct 624615 GTACAAAGATTATA 624602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444224248155