Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=676877 Score = 114 bits (126), Expect = 1e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 112063 TATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCT 112122 |||||||| ||| | ||||||||||| |||||||||||||| || | |||||| | Sbjct 624625 TATGTTGCACCAAAATGTCTCCATTGAAATCCATAAATAGGACCTAAATCTCCTTCTTCC 624684 Query 112123 GTATCTGGAAATTGCTCTCTATTCAACAAA-TCACTTCTAATATGAGGATTCCAAATCTT 112181 ||||| ||| | | | || | ||| |||| | ||| | || |||||| | Sbjct 624685 CTATCTATAAAAC-CACAAGAATCTAAAAACTCACGCGAACTATTCGCATCCCAAATATG 624743 Query 112182 CAC-TCCTTTAGATGATAACTCTCTT-GCATTTGTGGATCCTCTAATAAACCATAGCAAT 112239 || |||||| | | | | |||| ||||||||||||||| |||||||||||| |||| Sbjct 624744 AACATCCTTTTC--GCTTAATTTCTTTGCATTTGTGGATCCTTTAATAAACCATAACAAT 624801 Query 112240 TCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 || ||||| || |||||||| | || | ||| ||||||| | |||||| Sbjct 624802 TCCTCCACTACACCTTTCCAAAATACACGTTTTGTAGTTAATAATGGAAA 624851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391933987509253