Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1112 172 7e-38 >seq1112 Length=5701942 Score = 172 bits (190), Expect = 7e-38 Identities = 287/409 (70%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 89004 aaaaaTATTAATAGGTGTCACTGGCAGTGTTGCTACTATTAAATTACCGGAGTTGCTAGA 89063 ||| || || || ||| ||||| |||||||| || ||||||||||| | || |||| Sbjct 3493420 AAAGATTTTGATTGGTTGTACTGGTAGTGTTGCAACAATTAAATTACCACAATTAGTAGA 3493361 Query 89064 TAAATTATTAGGACTAGGTAATATTGAAATACGTATAGTAGCCACGAAAAACGCTACTCA 89123 |||||||| || || ||| ||||| | | ||||||| ||| |||| |||| || Sbjct 3493360 TAAATTAT--GGCGTAA-TAACTTTGAAGTGAGAATAGTAGTCACTGAAAAAGCTAAGCA 3493304 Query 89124 TTTCT---ATGATCAAAAAATAT----AATAATGCCTATTTACACCGATTCAGACGAATG 89176 ||| | | || | || | | ||| | ||| | ||| ||| ||||| Sbjct 3493303 TTTTTTGAAAGAGGCAGAACTGCCTCCAGGAATTCAAGTTTTATCTGATACAGTGGAATG 3493244 Query 89177 GTTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAG-GAGGTGGGCTG 89235 | | | ||| |||| | |||||||| |||||||| || |||| || ||||| | Sbjct 3493243 GGCTGCTTGGCAAGACAGAGGTGATCCTGTATTGCATATTGAT-TTAGTGAAATGGGCCG 3493185 Query 89236 ATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATAT 89295 || ||||| | || || ||| || ||||||||||| | || ||||||| |||||||| Sbjct 3493184 ATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGCAAAATAGCTAGTGGTATAT 3493125 Query 89296 GCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCAAAGCCCCTTATTTTTT 89355 | || || || |||||| | | | | || |||||| || |||||| | | |||| Sbjct 3493124 GTGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCATTAAAGCCTTTGGTCTTTT 3493065 Query 89356 GTCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACA 89404 |||||||||||||||| |||||||||||||||| |||||| | |||| Sbjct 3493064 GTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCAACACA 3493016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603162470843440