Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1766 104 2e-17 >seq1766 Length=1490156 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||||||||| || ||| |||||| |||| || ||| | Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| |||||| |||||||||||| |||| || | Sbjct 1264242 GATACCATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATC 1264299 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || || ||||| |||||||||||||| || | ||| | | |||||||||| Sbjct 1264300 AACAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTTCCGATTACA 1264359 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 1264360 ATATTCAAAAAGA 1264372 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||||||||| || || |||||| | || || ||| | Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| |||||||||||| |||| || Sbjct 1264013 CGATACTATTGAAAAT--GTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGAC 1264070 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | || || ||||| ||||||||||| || || | || | | ||||||||| Sbjct 1264071 CAACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTAC 1264130 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||| | |||||||| | ||||| || Sbjct 1264131 AATATTCAAAAAGAATCAACCCTCCATCTTGTTTTGCGACTTCGTGGTGG 1264180 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| || ||||| ||| |||||| | || || ||| | Sbjct 1263041 AATGCAAATTTTTGTCAAAACACTCACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1263100 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| ||||| || ||||||||| |||| || Sbjct 1263101 AGATACCATTGAAAAT--GTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCTGAT 1263158 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || | || || |||||||| ||||| ||||| || | || | | ||||||||| Sbjct 1263159 CAACAGAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGTACTCTTTCCGATTAC 1263218 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||| | ||||| || | ||||| || Sbjct 1263219 AATATTCAAAAAGAATCTACACTTCATCTTGTTTTACGACTTCGTGGTGG 1263268 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||||||||| || ||| |||||| |||| || ||| | Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| |||||| |||||||||||| |||| || | Sbjct 1263330 GATACCATTGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATC 1263387 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | | || |||||||| ||||| | || || | || | | |||||||||| Sbjct 1263388 AACAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACA 1263447 Query 27968 ACATCCAAAAAGA 27980 | || |||||||| Sbjct 1263448 ATATTCAAAAAGA 1263460 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || |||||||| || ||| |||||| | || || | ||||| | Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTG-AAGCATC 1263556 Query 27850 ---GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || | ||| || ||| ||||| || || || ||| |||| || Sbjct 1263557 TGATACTATTGAAAAT--GTTAAAACTAAAATCCAAGATAAGGAGGGTATTCCTCCAGAT 1263614 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || |||||||| || ||||| |||| || | || | | |||||||| Sbjct 1263615 CAGCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTAT 1263674 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| || | ||||| || ||||||||| | || || Sbjct 1263675 AATATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGG 1263724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851856575537