Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1766 152 1e-31 seq2209 150 4e-31 >seq1766 Length=1490156 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| || |||||||| || || ||||| | ||| || | ||||||| Sbjct 1264393 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCT 1264334 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| | | ||||| |||||||||| ||||| ||||| Sbjct 1264333 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 1264274 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||| || ||||| ||||| ||||| |||||| || ||||| || || Sbjct 1264273 TGAATTTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTT 1264214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || | ||||| Sbjct 1264213 TTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||||||||| || |||||||||| ||| || | |||||||||||||| Sbjct 1263928 TGTAGTGTCGACTCTTTTTGAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGT 1263869 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||| || || || |||| || ||||| || ||||| || Sbjct 1263868 TTACCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATACCCTCCTTATCTTGGATTTTA 1263809 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || ||||| ||||||||| | |||||| || |||||||| Sbjct 1263808 GTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAAAGTGATGGTTTTTCCCGTA 1263749 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| || || | |||||| Sbjct 1263748 AGAGTCTTAACGAAAATTTGCATT 1263725 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| || || || || |||||||| || || ||||| | ||| || Sbjct 1264175 ACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGT 1264116 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || || ||||| | | |||||||||||||||| || Sbjct 1264115 ACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACC 1264056 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || || || |||||| ||||| || || || || |||||| || | Sbjct 1264055 TTCTTTGTCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTAA 1263996 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || |||||||| || ||||| || || || | |||||| Sbjct 1263995 AGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || |||||||| || |||||||| | ||| || | |||||||||||||| Sbjct 1263700 TGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGCTGT 1263641 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | | ||| || || ||||||| || ||||| || ||||| || Sbjct 1263640 TTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTA 1263581 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || ||||| ||||||||| | || || || |||||||| Sbjct 1263580 GTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAATGGTTTTTCCCGTA 1263521 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | ||||| Sbjct 1263520 AGAGTCTTAACGAAAATTTGCAT 1263498 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||||||||| || |||||||| | | || | ||||||||| || || || || Sbjct 1263010 GTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCA 1262951 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | | ||| || || || |||| |||||||||||| || || || ||| Sbjct 1262950 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTT 1262891 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| ||||| || ||| |||||||| ||||| || || || || || | || Sbjct 1262890 ACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTT 1262831 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 1262830 TTGACAAAGATCTGCAT 1262814 >seq2209 Length=4115427 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | |||||| || || ||||| || || |||||||| | ||| || Sbjct 648206 CGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTT 648265 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || ||||| | |||||||| || ||||||| |||| Sbjct 648266 CTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCT 648325 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| ||| || ||||| || ||||| || |||||| || | Sbjct 648326 TCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAAG 648385 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || |||||||| || ||||| | ||||| Sbjct 648386 GTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || || |||||||| || |||||||| || || ||||| | || || Sbjct 664083 CGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTT 664142 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || ||||| | ||||| || || ||||||| |||| Sbjct 664143 CTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCT 664202 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| || || || || || || || || |||||| || ||| Sbjct 664203 TCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGA 664262 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || ||||| |||||||| || ||||| | |||||| Sbjct 664263 GTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | || || || || || ||||| || |||||||| | || || || Sbjct 648436 AAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCT 648495 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| ||||| || || || || || | ||||| ||||||||||||| |||||| Sbjct 648496 TCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTC 648555 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||| ||||| || || ||||| || ||||| || |||||| || || || Sbjct 648556 TTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGT 648615 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || ||||| || ||||| | |||||| Sbjct 648616 GATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | ||| | || || ||||| || || || ||||| || ||| Sbjct 663399 CGAAGTCTCAATACCAAGTGCAATGTAGATTCTTTCTGAATATTGTAATCTAAGAGTGTC 663458 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || || || || || || | ||||| || |||||||||| |||| Sbjct 663459 CTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATTCCT 663518 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || ||||| || |||||||| || || || || |||||| || || Sbjct 663519 TCTTTATCTTGAATCTTAGCCTTTACGTTTTCTATTGTATCCGAAGCTTCAACTTCAAGT 663578 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || ||||| || ||||| | |||||| Sbjct 663579 GTAATAGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 663620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159115895675315