Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1766 104 2e-17 >seq1766 Length=1490156 Score = 104 bits (114), Expect = 2e-17 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || || || || |||||||| || |||||||| Sbjct 1263967 ACGAAAATTTG--CATTCCACCTCTCAAACGCAATACTAAATGTAGTGTCGACTCTTTTT 1263910 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | |||||| || | || || |||||||| || ||||| || | | Sbjct 1263909 GAATATTATAATCCGAAAGTGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAATC 1263850 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||| || | ||| | | ||| || || |||||| ||| | | | | | Sbjct 1263849 TTTGCTGATCTGGGGGAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAATAG 1263790 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | || || |||| ||||| |||||||||| || || ||||| || |||| Sbjct 1263789 TATCAGATGCTTCAACCTCCAAAGTGATGGTTTTTCCCGTAAGAGTCTTAACGAAAATTT 1263730 Query 39281 GCAT 39284 |||| Sbjct 1263729 GCAT 1263726 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || ||||| || || || || |||||||| || ||||| Sbjct 1263741 TAACGAAAATTTG--CATTCCACCTCTCAAACGCAATACTAAATGTAGTGTTGATTCTTT 1263684 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||||||||||| ||| || || | || || |||||||| || ||||| || | Sbjct 1263683 TTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGCTGTTTACCAGCAAAAATCAA 1263624 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||||| || | || | | ||| || || |||||| ||| | | | | Sbjct 1263623 TCTTTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTAGTTTTAACATTTTCAAT 1263564 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| | || || |||| || || |||||||||| || || ||||| || || Sbjct 1263563 AGTATCAGATGCTTCAACCTCCAATGTAATGGTTTTTCCCGTAAGAGTCTTAACGAAAAT 1263504 Query 39279 TTGCAT 39284 |||||| Sbjct 1263503 TTGCAT 1263498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||||||| || | || ||||||| || |||||||| Sbjct 1263055 ACAAAAATTTG--CATTCCACCTCTTAAACGCAGTACTAAATGTAATGTTGACTCTTTTT 1262998 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||||||||| | | ||| ||| | || || || ||||| || ||||| || | | Sbjct 1262997 GAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAATC 1262938 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||| || | || | | || ||||| |||||| ||| | | | | | Sbjct 1262937 TTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTCGCTTTTACATTTTCAATGG 1262878 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | ||| || |||| || || |||| || |||| ||||| |||||||| | Sbjct 1262877 TATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGTTTTGACAAAGATCT 1262818 Query 39281 GCAT 39284 |||| Sbjct 1262817 GCAT 1262814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532873503503