Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1766 150 1e-31 seq2209 123 2e-23 seq1654 96.9 2e-15 >seq1766 Length=1490156 Score = 150 bits (166), Expect = 1e-31 Identities = 154/199 (77%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || || |||||||| || ||||| |||||||| | | Sbjct 1264182 ATGCAAATTTTCGTTAAAACTCTTACCGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1264241 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| ||||||| |||||||||||| | || || |||||| Sbjct 1264242 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCTGATCAA 1264301 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||| | || || ||||| || |||||| ||||||| | ||| |||||| |||||||| Sbjct 1264302 CAGAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACACTTT--CCGATTACA 1264359 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || |||||||| || || Sbjct 1264360 ATATTCAAAAAGAATCGAC 1264378 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || ||||||||||| || ||||| |||||||| | | Sbjct 1263270 ATGCAAATTTTCGTCAAAACTCTTACGGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 1263329 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| ||||||| |||||||||||| | || || |||||| Sbjct 1263330 GATACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCACCTGATCAA 1263389 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| || ||||| | || ||| | ||||||||| Sbjct 1263390 CAGAGACTGATCTTTGCCGGTAAACAGCTAGAAGATGGTCGTACTCTTTCCGATTACAAT 1263449 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || | ||| | ||| || | | ||||| || Sbjct 1263450 ATTCAAAAAGAATCAACCCTCCATCTTGTTCTACGTCTTCGAGGTGG 1263496 Score = 149 bits (164), Expect = 4e-31 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| || || ||||||||||| |||||| | || ||||| | | Sbjct 1263725 AATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATCACTTTGGAGGTTGAAGCATC 1263784 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| ||| |||| ||||||| ||||| || || || ||| | || ||||||| Sbjct 1263785 TGATACTATTGAAAATGTTAAAAC-TAAAATCCAAGATAAGGAGGGTATTCCCCCAGATC 1263843 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTA 23786 | || | || || ||||| || ||||| |||||||| | || |||||| | ||||| Sbjct 1263844 AGCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACACTTTCG--GATTA 1263901 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||||||||| ||| |||||||||| || | ||| |||| ||| Sbjct 1263902 TAATATTCAAAAAGAGTCGACACTACATTTAGTATTGCGTTTGAGAGGTGGA 1263953 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| || ||||| || ||||| || | Sbjct 1262814 ATGCAGATCTTTGTCAAAACATTGACAGGTAAAACAATAACTCTGGAGGTTGAGGCCTCA 1262873 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| |||||| ||||| ||||| | || |||||||| Sbjct 1262874 GATACCATTGAAAATGTAAAAGCGAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAG 1262933 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || |||||||| ||||| | ||| || ||| ||||| || Sbjct 1262934 CAAAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTATCTGATTATAAT 1262993 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| |||||||||||||| Sbjct 1262994 ATTCAAAAAGAGTCAACATTACATTTAGT 1263022 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || ||||||||||| || || | || ||||| | | Sbjct 1263498 ATGCAAATTTTCGTTAAGACTCTTACGGGAAAAACCATTACATTGGAGGTTGAAGCATCT 1263557 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| ||| |||| ||||||| ||||| || || || ||| | || |||||||| Sbjct 1263558 GATACTATTGAAAATGTTAAAAC-TAAAATCCAAGATAAGGAGGGTATTCCTCCAGATCA 1263616 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || ||||| |||||||| | || ||| | |||||| || Sbjct 1263617 GCAAAGATTGATTTTTGCTGGTAAACAGCTGGAAGATGGTCGTACTCTTTCCGATTATAA 1263676 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||| || ||| |||||||||| || | ||| |||| ||| Sbjct 1263677 TATTCAAAAAGAATCAACACTACATTTAGTATTGCGTTTGAGAGGTGGA 1263725 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| || || ||||| || || ||| | |||||||| | | Sbjct 1263953 AATGCAAATTTTCGTCAAAACTCTTACAGGAAAGACTATTACTTTAGAAGTTGAAGCTTC 1264012 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||| |||||| |||||||||||| | || || || || Sbjct 1264013 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1264072 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || |||||| | ||||| | || ||| | ||||||||| Sbjct 1264073 ACAGAGATTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACTCTTTCCGATTACAA 1264132 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||| || || | ||| | ||||| Sbjct 1264133 TATTCAAAAAGAATCAACCCTCCATCTTGTTTT 1264165 >seq2209 Length=4115427 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| ||||| |||||||| |||||||| |||||||| | | Sbjct 664076 AATGCAAATCTTTGTCAAAACTCTCACTGGAAAAACCATCACTCTTGAAGTTGAAGCTTC 664017 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || | |||| || ||| || |||||||| | || |||||||| Sbjct 664016 AGATACTATAGAGAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCAGATCA 663957 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || ||||| ||||||||||| ||||| | | || | ||||| || Sbjct 663956 ACAACGATTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663897 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||| | |||||||| || || | ||||||| Sbjct 663896 TATCCAAAAGGAATCTACACTCCATTTAGTGTTGAGACTTAGAGGAGG 663849 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || ||||| || | || |||||||| ||||| | |||||||| | Sbjct 648885 AAAATGCAGATCTTTGTTAAGACTTTAACAGGAAAAACCATCACCTTAGAAGTTGAAGCT 648826 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | ||||| || ||| || ||||| || | || |||||| Sbjct 648825 TCAGACACAATAGAGAATGTAAAAGCTAAGATTCAAGATAAAGAGGGAATTCCACCAGAT 648766 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || ||||| ||||||||||| ||||| | | || | ||||| Sbjct 648765 CAACAACGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTAT 648706 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || |||||||| || | ||| |||| || || | ||||||||| Sbjct 648705 AATATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGA 648655 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| ||||| || || || || || | |||||||| | | Sbjct 648426 ATGCAAATCTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 648367 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||||| | || | || || |||||||| | || |||||||| Sbjct 648366 GACACAATAGAAAATGTTAAAGCTAAGA-TTCAAGATAAAGAAGGAATTCCTCCAGATCA 648308 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || |||||||| ||||| | | | ||| | ||||| || Sbjct 648307 ACAACGTTTAATCTTTGCTGGTAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 648248 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || ||| | || ||||| || || | ||||| ||| Sbjct 648247 TATTCAGAAAGAATCTACACTTCACTTAGTGTTGAGACTTCGAGGGGGA 648199 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || ||||| || || || ||||| ||||| || |||||||| | | Sbjct 648655 AATGCAAATTTTTGTCAAAACTCTTACTGGGAAAACTATCACACTTGAAGTTGAAGCTTC 648596 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| || ||| ||||||||||| | || || || || Sbjct 648595 AGACACAATAGAAAATGTAAAGGCTAAGATTCAGGACAAAGAAGGAATTCCTCCTGACCA 648536 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || ||||| || ||||| || ||||| | | | ||| | ||||| || Sbjct 648535 GCAACGTTTGATTTTTGCTGGTAAACAGCTAGAAGATGGAAGAACTCTCTCAGATTATAA 648476 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||| | |||||||| || || | ||||||| Sbjct 648475 TATTCAAAAGGAATCTACACTCCATTTAGTATTGAGACTTAGAGGAGG 648428 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| ||||| || || || || || | |||||||| | | Sbjct 663847 ATGCAAATTTTTGTCAAAACTCTCACTGGCAAGACCATTACCTTAGAAGTTGAAGCTTCA 663788 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | || || |||||||| | || || ||||| Sbjct 663787 GATACAATAGAGAATGTTAAAGCTAAGA-TTCAAGATAAAGAAGGAATTCCTCCTGATCA 663729 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || || || ||||| ||||||||||| ||||| | | || | ||||| || Sbjct 663728 GCAACGATTGATCTTTGCTGGCAAACAACTTGAAGATGGTAGAACACTCTCAGATTATAA 663669 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| || | ||| |||| || || | ||||||||| Sbjct 663668 TATTCAGAAAGAGTCTACTCTTCATCTAGTATTGAGACTTCGAGGAGGA 663620 >seq1654 Length=5440108 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 32815 TTACGTTTTGAACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACC 32874 |||| || | |||||||||| ||||||||||| | || || | ||| || | ||||| Sbjct 1109858 TTACTTTATTCACATAATCTTGTCCTTTAATCATTAATAAATAATAACATTTAGAAAACC 1109917 Query 32875 AACGAGCGTGCATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGC 32934 | || || | |||||| | || || |||||||||||| ||||| | | | Sbjct 1109918 ATTTTGCATGTTGTTCCCAAGGATTATCTTCTCGTTCCCAATCTTTTAAACCACATCCAC 1109977 Query 32935 AGTAAAAACACACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATT 32994 | ||| |||| | | || || ||| |||| ||||| ||||||| || |||||||||| Sbjct 1109978 AATAATAACATATAGTTTGATCACCTTTTCCTGTATAATAAAAACCAGCATCTGCTAATT 1110037 Query 32995 GTGTGGGTTTCTGTTGCAAAGATTTTGGCCA 33025 || | | ||| ||| | |||||||||| Sbjct 1110038 GTTCTTTTGTTTGTAGCATAAATTTTGGCCA 1110068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999585514948