Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1766 167 6e-36 seq2209 156 1e-32 seq2287 125 2e-23 seq2021 113 1e-19 seq446 105 2e-17 seq2431 96.9 8e-15 >seq1766 Length=1490156 Score = 167 bits (184), Expect = 6e-36 Identities = 173/224 (77%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || ||||| ||||| || ||||||||||| | ||||||||||| | ||| Sbjct 1264175 ACGAAGTCGCAAAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGT 1264116 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| || || ||||| ||||| | || |||||||| || |||||||| Sbjct 1264115 ACGACCATCTTCTAATTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACC 1264056 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| || |||||| ||| || || || || | ||| || |||| Sbjct 1264055 TTCTTTGTCTTGAAT-TTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCTA 1263997 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || ||||| || || | |||||| | ||| | ||||||| Sbjct 1263996 AAGTAATAGTCTTTCCTGTAAGAGTTTTGACGAAAATTTGCATT 1263953 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| ||||| || ||||||||||| | ||||||||||| | ||| Sbjct 1263490 CGAAGACGTAGAACAAGATGGAGGGTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTA 1263431 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||||||| || || || ||||| |||| ||||| || || ||||||||| Sbjct 1263430 CGACCATCTTCTAGCTGTTTACCGGCAAAGATCAGTCTCTGTTGATCAGGTGGAATACCT 1263371 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| || |||||| || ||| ||| ||||| || || | ||| || || | Sbjct 1263370 TCTTTGTCTTGAAT-TTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAG 1263312 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | |||||| | ||| | |||||| Sbjct 1263311 AGTAATAGTTTTTCCCGTAAGAGTTTTGACGAAAATTTGCAT 1263270 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| ||||||||||| | ||||||||||| | || | |||||| Sbjct 1264393 AGTACAAGGTGAAGAGTCGATTCTTTTTGAATATTGTAATCGGAAAGTGTACGTCCATCT 1264334 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||| ||||| | || ||||| || || ||||||||||| |||||| Sbjct 1264333 TCCAATTGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCT 1264274 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||| || ||| ||| ||||| || || | ||| || || | || || || Sbjct 1264273 TGAAT-TTTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGT 1264215 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | |||||| | ||| | |||||| Sbjct 1264214 TTTTCCGGTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 131 bits (144), Expect = 4e-25 Identities = 165/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| | ||||| || || || ||||||||||| | ||||||||||| | ||| Sbjct 1263263 ACGAAGTCGTAAAACAAGATGAAGTGTAGATTCTTTTTGAATATTGTAATCGGAAAGAGT 1263204 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||| || || || ||||| | || ||||| || || |||||||| Sbjct 1263203 ACGGCCATCTTCCAACTGTTTACCGGCAAAGATCAATCTCTGTTGATCAGGAGGAATACC 1263144 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || || || || ||| || || ||| ||| ||||| ||||| | ||| || |||| Sbjct 1263143 TTCTTTATCCTGAAT-TTTAGCTTTAACATTTTCAATGGTATCTGAAGCTTCAACTTCTA 1263085 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || || || || || | ||||| | || | ||||||| Sbjct 1263084 AAGTAATAGTTTTTCCAGTGAGTGTTTTGACAAAAATTTGCATT 1263041 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || ||||||||||| | ||| ||||||| | ||| | |||||||| ||||| Sbjct 1263700 TGTAGTGTTGATTCTTTTTGAATATTATAATCGGAAAGAGTACGACCATCTTCCAGCTGT 1263641 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || ||| || || || |||||||| ||||| |||||||| || Sbjct 1263640 TTACCAGCAAAAATCAATCTTTGCTGATCTGGAGGAATACCCTCCTTATCTTGGATTTTA 1263581 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || || || || | ||| || || || || || || || ||||| Sbjct 1263580 GTTTTAACATTTTCAATAGTATCAGATGCTTCAACCTCCAATGTAATGGTTTTTCCCGTA 1263521 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | |||||| Sbjct 1263520 AGAGTCTTAACGAAAATTTGCAT 1263498 Score = 116 bits (128), Expect = 9e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || |||||||| | ||| ||||| | || || | ||||||||||| || || ||| Sbjct 1263010 GTTGACTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAGTTGTTTACCA 1262951 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || ||| || || || ||||| |||||||||||||| || ||| || || Sbjct 1262950 GCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGAAT-TTTCGCTTT 1262892 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| ||||| ||||||| || || || | || || || || || ||||| || Sbjct 1262891 TACATTTTCAATGGTATCTGAGGCCTCAACCTCCAGAGTTATTGTTTTACCTGTCAATGT 1262832 Query 225696 TTT 225698 ||| Sbjct 1262831 TTT 1262829 >seq2209 Length=4115427 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || | ||| || || |||||||| || | ||| ||||| | | |||| Sbjct 648206 CGAAGTCTCAACACTAAGTGAAGTGTAGATTCTTTCTGAATATTATAATCTGAAAGAGTT 648265 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||||||||| || || ||||| ||||| | |||||||| || || ||||| ||| Sbjct 648266 CTTCCATCTTCTAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGAATTCCT 648325 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| || ||| ||| || |||||||| | ||| || ||||| Sbjct 648326 TCTTTATCTTGAATCTTAGCTTTAACATTTTCTATTGTGTCTGAAGCTTCAACTTCTAAG 648385 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | |||||| | || | |||||| Sbjct 648386 GTAATGGTCTTGCCAGTGAGAGTTTTGACAAAGATTTGCAT 648426 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 |||||||||| || || || ||||| ||||||||||| | ||||||||| | | ||| Sbjct 664083 CGAAGTCTCAATACCAGATGAAGAGTAGATTCTTTTTGAATATTGTAATCTGAGAGTGTT 664142 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || || || ||||| ||||| | |||||| || ||||| ||||| ||| Sbjct 664143 CTTCCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCGTTGCTGATCGGGAGGAATTCCT 664202 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||| ||| ||| || || || ||||| | ||| || || | Sbjct 664203 TCTTTATCTTGAATCTTAGCCTTTACATTCTCTATAGTATCTGAAGCTTCAACTTCAAGA 664262 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||| | || | ||||||| Sbjct 664263 GTGATGGTTTTTCCAGTGAGAGTTTTGACAAAGATTTGCATT 664304 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| || | ||||| || ||||| ||||| | ||| ||||| | | |||||| Sbjct 648436 AAGTCTCAATACTAAATGGAGTGTAGATTCCTTTTGAATATTATAATCTGAGAGAGTTCT 648495 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||||||| || ||||| || || | ||||| ||||| || ||||| ||||| Sbjct 648496 TCCATCTTCTAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCAGGAGGAATTCCTTC 648555 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| || ||||| ||| ||| ||| || |||||||| | ||| || || | || Sbjct 648556 TTTGTCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCTGAAGCTTCAACTTCAAGTGT 648615 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || || || | |||||| | || | ||||||| Sbjct 648616 GATAGTTTTCCCAGTAAGAGTTTTGACAAAAATTTGCATT 648655 >seq2287 Length=783699 Score = 125 bits (138), Expect = 2e-23 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || ||||||||||| || ||||| ||||| |||||||| Sbjct 49300 GAAAATTTGTCCATCAGTAATGGAAATAACATTTGTGGGAATATATGCAGACACATCACC 49241 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||||| ||||||| ||| ||||| || ||| ||| ||| Sbjct 49240 AGCTTGTGTTTCAATGACAGGTAAAGCTGTTAATGAACCACCTCCTAAACTTTCATT 49184 >seq2021 Length=1035722 Score = 113 bits (124), Expect = 1e-19 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||| || || | ||||| | |||||||||| ||||| ||||| || | Sbjct 239203 CTTTTTGAATATTATAGTCCGATAAAGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 239262 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT-CACAGCT 225642 |||| ||||| || || || || || ||||| || || || || ||| |||| |||| | Sbjct 239263 TAAGACGTTGCTGATCAGGTGGTATTCCTTCTTTATCCTGAAT-TTTAGCTTTCACATTT 239321 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||| | ||| || || | ||||| || || |||||||||||||| Sbjct 239322 TCTATAGTATCTGATGCTTCTACTTCAAGAGTGATAGTTTTACCCGTCAAAGTTTT 239377 >seq446 Length=3012682 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| | || ||||| ||| | ||||| || || |||| || ||||| |||||| Sbjct 1556051 CATGCATTTTTAATAATTTTTTTTATAGTTATACCATTTTTGATTGGAGGTTTTGGAAAT 1556110 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 ||||| | || || || | ||| | |||||||| | |||||| | | || ||||| Sbjct 1556111 TGATTAATCCCATTGATATTAGGTTCACCTGATATACCATTTCCACGAATAAATAATATT 1556170 Query 7699 AGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || ||||||||| |||| ||||| |||||| || Sbjct 1556171 AGATTTTGATTATTACCTCCTTCATTATTTATA 1556203 >seq2431 Length=15895 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| || | || ||||| ||| | ||||| || | | || || ||||| |||||| Sbjct 2067 CATGCATTCCTAATAATTTTTTTTATAGTTATACCATTCCTAATTGGAGGTTTTGGAAAT 2126 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 ||||| |||||||||| | || |||| ||||| || ||||| | | || ||||| Sbjct 2127 TGATTAATTCCTTTAATATTAGGATCTCCAGATATAGCATTTCCTCGAATAAATAATATT 2186 Query 7699 AGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 || || |||||||| || ||||| |||||| || Sbjct 2187 AGATTCTGATTACTTCCTCCTTCATTATTTATA 2219 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| |||||||||||||| | || ||||| || || ||| Sbjct 2612 TTCTGGGTGGCCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCTCCACCTCCTAT 2553 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 |||||||||||| |||||||||||||| |||| Sbjct 2552 TGGATCAAAAAATGAAGTATTAAAATTTCGATCA 2519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192494056007114