Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1766 91.5 1e-13 >seq1766 Length=1490156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||||||||||||||||| | ||| | ||||||||| ||||| || Sbjct 1263238 GTAGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGGCCATCTTCCAACTGTTTACCG 1263179 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||||| || || | |||||||| || |||||| ||| Sbjct 1263178 GCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATTTTAGCTTTA 1263119 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || |||| | ||| | ||||||||||| || || | |||| Sbjct 1263118 ACATTTTCAATGGTATCTGAAGCTTCAACTTCTAAAGTAATAGTTTTTCCAGTGAGTGTT 1263059 Query 101222 TTAATAAAAATTTGCATT 101239 || | ||||||||||||| Sbjct 1263058 TTGACAAAAATTTGCATT 1263041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||| | ||| ||||||||||||||||||||||||| | ||| | | |||||||||| Sbjct 1264385 GTGAAGAGTCGATTCTTTTTGAATATTGTAATCGG--AAAGTGTACGTCCATCTTCCAAT 1264328 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 ||||| || ||| | || | || ||||| || || | ||||||||||| |||| Sbjct 1264327 TGTTTTCCAGCAAAGATCAATCTCTGTTGATCAGGAGGAATACCTTCTTTGTCTTGAATT 1264268 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 ||| ||| |||| | | || || | | ||| | ||||||||||| || Sbjct 1264267 TTTGCTTTTACATTTTCAATGGTATCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCG 1264208 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||||| ||||||||||| Sbjct 1264207 GTAAGAGTTTTAACGAAAATTTGCAT 1264182 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 |||||||||||||||||||||||||||| | ||| |||||| |||||||| || Sbjct 1264150 GTTGATTCTTTTTGAATATTGTAATCGGAAAGAGTACGACCATCTTCTAATTGTTTTCCA 1264091 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || |||||||| || | ||||||||||| |||||| |||| Sbjct 1264090 GCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTC 1264031 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT---GTTTCGACGGTAATAGTTTTGCCCGTCAAT 101218 |||| | | || || ||| | | ||| | |||||||| || || || | Sbjct 1264030 ACATTTTCAATAGTATC---GGAAGCTTCAACTTCTAAAGTAATAGTCTTTCCTGTAAGA 1263974 Query 101219 GTTTTAATAAAAATTTGCATT 101239 ||||| | |||||||||||| Sbjct 1263973 GTTTTGACGAAAATTTGCATT 1263953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409648662646629