Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq613 118 9e-22 >seq613 Length=358256 Score = 118 bits (130), Expect = 9e-22 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 4787 AAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 ||||| |||| || |||| || ||| |||||| || || |||| | |||| Sbjct 259979 AAATATTTTATTTACCTTTCTTTTGCATCTGCAATATATGTATCAATTAACAAAGAATAC 260038 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||| ||||| | |||||| || |||| ||||| || ||||| || | || |||||| Sbjct 260039 ATTTCTGAATGAACATTTTCCATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTT 260098 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | ||| ||||| | || ||||| ||| || | || || || || || || ||| ||| Sbjct 260099 ATTTGTACTTCTTGACTAAATCGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCT 260158 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAA 4993 |||||||| || || |||||||||||||| Sbjct 260159 GCAAAAAATGCTAAGACATGAGATATAAA 260187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 ||||||| |||| || || |||||||| ||||| || | ||| |||| ||||| || | Sbjct 259396 CTACAAGTAATCTATCTGCAACAAATTCGATATATTGACACATAAGTTTACAGTTCATGC 259455 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTG 4488 | || | | ||||||| || | ||| ||||| |||||||| || | || || || Sbjct 259456 CTATCATTTCAACAGGTAATGCATCTGTTAAAAATTCTTGTTCAATTTTGACAGCATCCT 259515 Query 4489 TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAAC 4548 | || || | | | | || ||||||||| | ||| | || | |||| ||||| Sbjct 259516 TAATAATTGATGTGACTCGTTCACAAGATGGTTTTTGTACAATGTGTTTGAACATTAAAC 259575 Query 4549 ACGCAAAATCACAATGCAAACC 4570 | |||||||||||||| || || Sbjct 259576 ATGCAAAATCACAATGTAATCC 259597 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| |||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||||||||| | ||||| |||| | |||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCT 260404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036947454523