Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq69 192 8e-44 seq613 154 2e-32 >seq69 Length=621926 Score = 192 bits (212), Expect = 8e-44 Identities = 230/310 (74%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 77030 TTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCT 77089 ||| || |||||| || || ||||||| ||| || ||||| |||| ||| | | | Sbjct 549456 TTGTATAGAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTT 549397 Query 77090 CTCTGTTAAAACTC-TAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTC 77148 || |||||| ||| ||| || |||||||| || | |||||| ||||| |||| ||||| Sbjct 549396 TTCAGTTAAATCTCGTAATAAG-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTC 549338 Query 77149 TACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAG 77208 | | ||||| ||||| ||||| |||||||| | ||||||||| ||||| |||||||| | Sbjct 549337 TTCTTGTGTAGATATTGCTGGTGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTG 549278 Query 77209 CAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGA 77268 | || || || |||||||||||||| | || ||| |||||| | |||||| | | Sbjct 549277 CCGTTGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAA 549218 Query 77269 TTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGT 77328 |||| | ||| | | |||||||||| | || | || | ||||| ||| | ||||| Sbjct 549217 TTTTTTTTTTCAAAATAGTCCAATCCCATAAATTAGTTGGAATAACATTCCACATATCGT 549158 Query 77329 ATTGTAGAAT 77338 |||||| ||| Sbjct 549157 ATTGTAAAAT 549148 Score = 150 bits (166), Expect = 2e-31 Identities = 225/316 (71%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || || ||||| ||||||||||| | ||| || | |||||| | |||||||||||||| | Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 ||||| || | ||||||||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || ||||| | ||||||||| | ||| |||||| ||| ||| |||| || Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 547315 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGA 78304 | || ||||| |||||| |||| | || || || || || || || Sbjct 547314 GTACCTCTTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTGCT 547259 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA-TGT 78363 || || || || | ||| ||||| || || || || || ||||| || || ||| ||| Sbjct 547258 AATAAGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGT 547199 Query 78364 TAAGAAGAAAACAGCT 78379 ||| || ||||||||| Sbjct 547198 TAATAA-AAAACAGCT 547184 Score = 149 bits (164), Expect = 9e-31 Identities = 249/358 (70%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||||||||| ||| || || | ||||||||||| ||||||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || |||||||| | ||||| | | ||| | ||| || | | ||||| ||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 548678 Query 77644 AATCAAATCTTCCATCTA------TAACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||||||| || || | | |||||||| || | ||| || || |||| ||||| Sbjct 548677 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 548618 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || |||| | ||| ||| || | | || ||||||| |||||||| | Sbjct 548617 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 548558 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 | || || || | |||||| || || || ||||| |||| || |||||||| ||| Sbjct 548557 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGA-TCTTTATAAAGCATA 548499 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 | ||||| || ||||||| || || | ||||| | |||| | ||||||||| Sbjct 548498 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTT 548441 Score = 138 bits (152), Expect = 2e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || ||||||||||| |||||||||||| |||| ||||| |||||| ||| Sbjct 548117 GTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTGGA 548058 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || | ||| | ||| ||| ||||||||||||||| ||||||||||||||| Sbjct 548057 CACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 547998 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT 78076 |||||| |||| |||| | ||||| |||||| || ||||| Sbjct 547997 AGAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 123 bits (136), Expect = 3e-23 Identities = 193/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || || ||| | |||| ||| | ||| ||||||||||| ||||| Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | ||| || ||||| |||||| || || || ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| ||||||||||| ||||||||||| || || |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 || || || | |||| | ||||| ||||||||||| || || ||| ||||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 78618 TAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 ||||| || ||||||||| ||| |||| |||| Sbjct 546876 TAAATTATTGCAGAATTTAACTTA--TTTGCATTT 546844 >seq613 Length=358256 Score = 154 bits (170), Expect = 2e-32 Identities = 168/222 (76%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 |||| |||| || || ||||| ||||| | | ||||||||| || |||| |||||| Sbjct 260001 TTGC-ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCC 260059 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 || || | ||||| || |||||||| | || ||||| || ||||| || || |||| Sbjct 260060 ATGGCAACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAAT 260119 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 |||||| | | ||||||||| || ||||||||| ||| |||||||||||||| ||||| Sbjct 260120 CGTTCAACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGA 260179 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 ||||||| |||||| || ||| | |||||||| ||| Sbjct 260180 GATATAAAATGTTTTTCACTGTCAGTTAAATTATTCCAATCA 260221 Score = 129 bits (142), Expect = 8e-25 Identities = 166/225 (74%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| |||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | || ||| ||||| ||||| | || ||| |||| || || || | ||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGG 48115 |||||||| || ||||||||||| || || ||||| || ||| |||| | ||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGT----TCACAAGATGG 259546 Query 48116 --ATACAACAA-ATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | |||| ||||| |||||||||||||||||||||||||| Sbjct 259547 TTTTTGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 259591 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| |||||||| |||||||||| ||||| || |||||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| |||||| |||| || || |||| |||||||||| |||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 260415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694647690751840