Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq69 194 2e-44 seq613 165 1e-35 >seq69 Length=621926 Score = 194 bits (214), Expect = 2e-44 Identities = 218/289 (75%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTC-TAAGGA 75704 ||||||| ||| || || || |||| ||| | | | | || |||||| ||| ||| | Sbjct 549435 TATAATTTCATTTTTCATATCCTCATCCCAAAGATCTTTTTCAGTTAAATCTCGTAATAA 549376 Query 75705 GATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGG 75764 | |||||||| |||| |||||| ||||| |||| |||||||| ||||| ||||| |||| Sbjct 549375 G-TGAGGATTTACAACTTGAAACTCTCCTGACAGTACTCTTCTTGTGTAGATATTGCTGG 549317 Query 75765 TATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAG 75824 | |||||||| | ||||||||| ||||| |||||||| || ||||| || || ||||||| Sbjct 549316 TGTATGGTTCTATAGATTCATTATTTCCTAAAATTTGTGCCGTTGATGCTGTTGGCATAG 549257 Query 75825 GTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCC 75884 |||| | || ||| |||||| | |||||| | ||||| | ||| | | ||| Sbjct 549256 GTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTTTTTCAAAATAGTCC 549197 Query 75885 AATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||||| | || | ||| | ||||| ||| | ||||||||||| ||| Sbjct 549196 AATCCCATAAATTAGTTGGAATAACATTCCACATATCGTATTGTAAAAT 549148 Score = 163 bits (180), Expect = 4e-35 Identities = 225/312 (72%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || || ||||| ||||||||||||| || || | |||||| | |||||||||||||| | Sbjct 547494 TTACCAGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTAAA 547435 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 ||||| || | | || |||| |||||| ||||| ||||| | ||||| || || ||| Sbjct 547434 TATATAGCAAATGCTCCAGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTA 547375 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || || ||||| | ||||||||| | || |||||| |||| ||| |||| || Sbjct 547374 TTGTATACTCTAATCATTGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 547315 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 | || | ||| |||||| | | | || || || || || || ||| || Sbjct 547314 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATA 547255 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAG 76962 || ||||| | ||| ||||||||||| || || || |||||||| || ||| |||||| Sbjct 547254 AGTGCACATCTTTTTAATGTGTCATAAATTCCTTCAATACTATCTTCACTCATTGTTAAT 547195 Query 76963 AAGAAAACAGCT 76974 || ||||||||| Sbjct 547194 AA-AAAACAGCT 547184 Score = 150 bits (166), Expect = 3e-31 Identities = 270/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| |||||||||||||| ||| || || ||||||||||| || |||||||| | Sbjct 548797 TACCTATAGGTCTATGTCTAAAATTTGATTTTCTTGCTTCTGGAATGGGATAATAATTGA 548738 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||| |||||||| | ||||| | ||| | ||| || | | ||||| ||| Sbjct 548737 CATCGATAATTTTGTCCAGATTACAAGTAACAATTTTTGTTACTTTCAGAAGTTTTTGAA 548678 Query 76239 AATCAAATTTTCCATCTATC------ACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||||||| || || || ||||||||||||| ||| || || |||| ||||| Sbjct 548677 AATCAAATGTTTGATTAATGGGATTTACAAACATATTAACAGCAATTGAAGCTAAATTAC 548618 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || |||| | | ||| ||| || | | || || |||| |||||||| || Sbjct 548617 ACACAGCAACTTCATCTGGACTGGAATACTGCACAACTTCTGTACATAAATTACTACTCT 548558 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAGAACA 76411 | || ||||| | |||||| || || || || | |||| || |||||||| | | Sbjct 548557 TTATTGTTCCTATATTTTGATGATTTGATTTGCGATTGCAATGA-TCTTTATAAAGCATA 548499 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 | |||||||| ||||||| || || | ||||| | |||| | ||||||||| Sbjct 548498 TATGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTAGCTTGA 548439 Query 76472 ATTATAGATTTGTATCGCTTCTCTCTTTCATA 76503 ||| ||| |||| ||||| | ||||| Sbjct 548438 ATTTGTCGTTTATATCTTTTCTCATTCTCATA 548407 Score = 138 bits (152), Expect = 2e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | ||||||||||| |||||||||||| ||||||||||| |||||| | Sbjct 548119 GTGTATAGAGAATTTCAAATTCATTGCCCCAAACATCAGCCAAACCAGGAGATTCATGTG 548060 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || | ||| | ||| ||| ||| ||||||||||| ||||||||||||| Sbjct 548059 GACACATTAAAGTCCATATATCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCC 548000 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 |||||||| |||| |||| | |||| |||||| || ||||| Sbjct 547999 ATAGAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGT 547954 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | | || ||| ||||| || || || ||||| ||||| || Sbjct 549038 ATAAGTTTCATATGTACCTTTTTCTTTAGCAAGTTCACAGCTGGCTTCTAAAGCACCATA 548979 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | |||||| || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 548978 ATATAGTGTTTCAAATATTTGAATATTAAGTTTTTGTGCTTCTTCACTTTCAAATGGATA 548919 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | | || |||||||||||| || || |||| ||||||||| Sbjct 548918 ACGCATTAAAAGAAATGCATCTGCAAGACCTTGAATTCCAATACC 548874 Score = 102 bits (112), Expect = 1e-16 Identities = 178/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||||||| || || ||| | |||| ||| | ||| ||||||||||| || || Sbjct 547116 CTAGACATTTGCTGTTGCCTAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 547057 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | ||| || ||||| ||| || || ||||| ||| || Sbjct 547056 TAACGTTCTGATAAAAAATTATAAGTTTCTATAGCTTTGTCAATATCTTCACCATGGATA 546997 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || || || | ||| ||||||||||| |||| ||| || || || |||||| Sbjct 546996 GCAACTGCAACTCTCATTAACATATGCTGTGGTCTTTCAACTACTTTTCCATGTATTTTT 546937 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || | |||| | ||||| ||||||||||| || || ||| ||||| || Sbjct 546936 AATAAATAACTTCTTTCAAGCGTTTTGAAACCAAAATAATTATAACTAAAATCTCTATCA 546877 Query 77213 TAAATAATAACCGAATTTA 77231 ||||| || | ||||||| Sbjct 546876 TAAATTATTGCAGAATTTA 546858 >seq613 Length=358256 Score = 165 bits (182), Expect = 1e-35 Identities = 169/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||| || ||||||||| ||||| | | ||||||||||||||||| ||||| || || Sbjct 260005 ATCTGCAATATATGTATCAATTAACAAAGAATACATTTCTGAATGAACATTTTCCATGGC 260064 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 | ||||| || |||||||| | ||| || || || ||||| ||| || ||||||||| Sbjct 260065 AACTTGAAAACCATAAAAACAACGTGCCTCTGTTATTTGTACTTCTTGACTAAATCGTTC 260124 Query 47010 AGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 | |||| ||||||||| || ||||||||| ||| ||||||||||| || ||||| | Sbjct 260125 A-ACAAGATTCTCATTGACGATTCCATCAGAAGCTGCAAAAAATGCTAAGACATGAGATA 260183 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 |||||| ||||||| | ||| | |||||||| ||| Sbjct 260184 TAAAATGTTTTTCACTGTCAGTTAAATTATTCCAATCA 260221 Score = 132 bits (146), Expect = 7e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||||| | ||||||||| || | |||||||||||| ||||| ||||| Sbjct 259371 TTACAAACCTTTTTACAACCTAATTCTACAAGTAATCTATCTGCAACAAATTCGATATAT 259430 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | || ||| ||||| ||||| | || || |||| || || || | ||| Sbjct 259431 TGACACATAAGTTTACAGTTCATGCCTATCATTTCAACAGGTAATGCATCTGTTAAAAAT 259490 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| ||||||||||| || || ||||| ||| ||| | |||| Sbjct 259491 TCTTGTTCAATTTTGACAGCATCCTTAATAATTGATGTGACTCGTTCACAAGATGGTTTT 259550 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | ||||| |||||||||||||||||||||||||| Sbjct 259551 TGTACAATGTGTTTGAACATTAAACATGCAAAATCACAATG 259591 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| |||||||| ||||||| || || || || |||||||||||||| | Sbjct 260305 CTTTAGAAAGATCCACTTCTTCCACTGTCCAAAAAGATGCTTCAGCTTTTTTATACATTT 260364 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| |||||| | |||| || ||||||| |||||||||| |||||||| Sbjct 260365 GCCAAATATCAGGCCATTGAATAGGAAAAACAACAAATCTACGTGGATTTT 260415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912735705920